Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,002,536 – 6,002,627 |
Length | 91 |
Max. P | 0.562198 |
Location | 6,002,536 – 6,002,627 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 75.08 |
Mean single sequence MFE | -26.48 |
Consensus MFE | -14.25 |
Energy contribution | -13.45 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.29 |
Mean z-score | -1.58 |
Structure conservation index | 0.54 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562198 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6002536 91 + 27905053 CCAACAUCC-------ACAUCACAGCCACAACAACCACAACAGAGGCUUGGAAUGCUGUCAAAGUC------------GAAGCGUGGAAAGCCGUG------UCUGGGCAUGUGAA .........-------...((((((((.(((((...........(((((...(((((.((......------------)))))))...))))).))------).))))).))))). ( -25.60) >DroSec_CAF1 14474 91 + 1 CCAACAUCC-------ACAUCACAGCCACAACAACCACAACAGUGGCUUGGAAUGCUGUCAAAGUC------------GAAGCGUGGAAAGUCGUG------UCUGGGCAUGUGAA .........-------...((((((((.(((((.((((....))))(((...(((((.((......------------)))))))...)))...))------).))))).))))). ( -24.20) >DroEre_CAF1 14832 97 + 1 CCAACAUCC-ACAUCCACAUCACAGCCACAACAACCACAACAGCAGCCUGGAAUGCUGUCAAAGUC------------GAAGCGUGGAAAGCCGUG------UCUGGGCAUGUGAA ........(-((((((....(((.((........((((.((((((........))))))....((.------------...))))))...)).)))------....)).))))).. ( -23.80) >DroYak_CAF1 16034 98 + 1 CCAACAUCCAACAUCCACAUCACAGCCACAACAACCACAACAGCAGUCUGGAAUGCUGUCAAAGUC------------GAAGCGUGGAAAGCCGUG------UCUGGGCAUGUGAA ...................((((((((.(((((.((((.((((((........))))))....((.------------...)))))).......))------).))))).))))). ( -23.80) >DroMoj_CAF1 19082 85 + 1 ACAACGAGA-------ACAA-----CG-CAACUCGAACAACAUCGGCCCGGAAUGCUGUCAAAGCU------------GAAGCGUGGAAACCCUUG------UCUGGGCAUGUGUA ....((((.-------....-----..-...))))....((((..((((((((((((.(((....)------------)))))))(....).....------)))))))..)))). ( -25.30) >DroAna_CAF1 12980 100 + 1 --------U-------ACAU-GCAUCGAAAUAAGCCACAGCAGCGGCUUGGAAUGCUGUCAAAGUCGAGCUCAGACCCGAAGCGUGGAAAGCCGUGUCUGUGUCUGGGCAUGUGAA --------(-------((((-((.........((.(((((..(((((((...(((((.((...(((.......)))..)))))))...)))))))..))))).))..))))))).. ( -36.20) >consensus CCAACAUCC_______ACAUCACAGCCACAACAACCACAACAGCGGCCUGGAAUGCUGUCAAAGUC____________GAAGCGUGGAAAGCCGUG______UCUGGGCAUGUGAA .......................................(((...((((((((((((.......................)))))((....)).........))))))).)))... (-14.25 = -13.45 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:31 2006