Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,987,709 – 5,987,902 |
Length | 193 |
Max. P | 0.837244 |
Location | 5,987,709 – 5,987,806 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 83.17 |
Mean single sequence MFE | -37.65 |
Consensus MFE | -28.29 |
Energy contribution | -29.65 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.03 |
Mean z-score | -2.11 |
Structure conservation index | 0.75 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.758312 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5987709 97 - 27905053 ACA------------GCUGCAACCAGUUGCAUCCAGUGCCGAUCUUCUGGCCGGCGGAGAUCAGUUCUCCAAUUCGACGAUGAAAUCGGAGGACGCCAUCAACGGCAGU------ .((------------((((....))))))..(((...((((..(....)..))))(((((.....)))))..(((((........)))))))).(((......)))...------ ( -32.30) >DroVir_CAF1 1 112 - 1 GAACACAACGACCGCGCUCCCGGCUGUUGCUUCCAGCGCCGAUUUACUCGCCGGCGGCGAACCAGUGACCAAUUCAACCACUAAAUCCGAGGAUGCCACCCCAGGAAGUUGA--- .....((((..(((((((...(((....)))...))))).............((.(((.....((((...........))))..(((....)))))).))...))..)))).--- ( -30.20) >DroSec_CAF1 1 100 - 1 ACA------------GCUGCAACCAGUUGCAUCCAGUGCCGAUCUUCUGGCCGGCGGAGAUCAGUUCUCCAAUUCGACGAUGAAGUCGGAGGACGCCAUCAACGGCAGUUGA--- .((------------(((((.....((.((.(((...((((..(....)..))))(((((.....)))))..((((((......))))))))).)).)).....))))))).--- ( -41.20) >DroSim_CAF1 1 100 - 1 ACA------------GCUGCAACCAGUCGCAUCCAGUGCCGAUCUUCUGGCCGGCGGAGAUCAGUUCUCCAAUUCGACGAUGAAGUCGGAGGACGCCAUCAACGGCAGUUGA--- .((------------(((((.....((.((.(((...((((..(....)..))))(((((.....)))))..((((((......))))))))).)).)).....))))))).--- ( -41.20) >DroEre_CAF1 41 103 - 1 ACA------------GCUGCAACCAGUUGCAUCCAGUGCCGAUCUUCUGGCGGGCGGAGAUCAAUUCUCCAAUUCGACGAUGAAGUCGGAGGACGCCAUCAACGGCAGUUGAAGG .((------------(((((((....))))).....(((((......(((((..((((((.....)))))..((((((......)))))))..)))))....))))))))).... ( -40.00) >DroYak_CAF1 1 100 - 1 GCA------------GCUGCAACCAGUUGCAUCCAGUGCCGAUCUUCUGGCCGGCGGAGAUCAAUUCUCCAAUUCGACGAUGAAGUCGGAGGACGCCAUCAACGGCAGUUGA--- (((------------((((....))))))).(((...((((..(....)..))))(((((.....)))))..((((((......))))))))).(((......)))......--- ( -41.00) >consensus ACA____________GCUGCAACCAGUUGCAUCCAGUGCCGAUCUUCUGGCCGGCGGAGAUCAAUUCUCCAAUUCGACGAUGAAGUCGGAGGACGCCAUCAACGGCAGUUGA___ ...............(((((.....((.((.(((...((((.((....)).))))(((((.....)))))..((((((......))))))))).)).)).....)))))...... (-28.29 = -29.65 + 1.36)
Location | 5,987,806 – 5,987,902 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 86.39 |
Mean single sequence MFE | -38.88 |
Consensus MFE | -33.25 |
Energy contribution | -33.70 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.19 |
Mean z-score | -2.01 |
Structure conservation index | 0.86 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837244 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5987806 96 + 27905053 GCCUGUUGCACUGCCACGUUCACUGGGACCAUUGGCACCAUCGGCACAGCCGUGGCUUCCAUUCCCGGAGCGGUGCUAAUAGUUCUGGCCAGAUUC (((.((.((...)).)).......(((((.(((((((((..((((...))))..(((.((......)))))))))))))).))))))))....... ( -33.80) >DroSec_CAF1 101 96 + 1 GCCUGCUGCACCGCCACGUUCACUGGGACCAUUGGCACCAUCGGCACAGCCGUGGCUUCCAUUCCCGGAGCGGUGCUAAUGGUUCUGGCCAGAUUC (((.((......))..........(((((((((((((((..((((...))))..(((.((......)))))))))))))))))))))))....... ( -40.00) >DroSim_CAF1 101 96 + 1 GCCUGUUGCACCGCCACGUUCACUGGGACCAUUGGCACCAUCGGCACAGCCGUGGCUUCCAUUCCGGGAGCGGUGCUAAUGGUUCUGGCCAGAUUC (((.((.((...)).)).......(((((((((((((((..((((...))))..((((((.....))))))))))))))))))))))))....... ( -44.30) >DroEre_CAF1 144 96 + 1 GCCGCUUGCACAGCCACAUUUACUGGGACUAUGGGCACCAUCGGCACAGCCGUGGCUUCCAUUCCCGGAGCGGUGCUUAUGGUUCUGGCCAGAUUC ((((((.....)))..........(((((((((((((((..((((...))))..(((.((......)))))))))))))))))))))))....... ( -38.70) >DroYak_CAF1 101 96 + 1 GCCUGUUGCACUGCCACGUUCACUGGGACCAUUGGCACCAACGGCACAGCCGUGGCCUCCAUUCCGGGAGCGGUGCUAAUGGUUCUGGCCAGAUUC (((.((.((...)).)).......(((((((((((((((.(((((...))))).((..((.....))..))))))))))))))))))))....... ( -42.90) >DroAna_CAF1 86 96 + 1 GCUUGGGGCACUGGAAUAGCCACUGGGAUAACUGGAACCAAGGGCACGGCCGAAGCAUCCACUCCUGGGGCCGUGCUUAUAGUCCUGGCCAGAUUU ..(((((((.........))).(..((((...((....)).((((((((((..((.........))..))))))))))...))))..))))).... ( -33.60) >consensus GCCUGUUGCACUGCCACGUUCACUGGGACCAUUGGCACCAUCGGCACAGCCGUGGCUUCCAUUCCCGGAGCGGUGCUAAUGGUUCUGGCCAGAUUC ((.....)).............(..((((((((((((((..((((...))))..((.(((......)))))))))))))))))))..)........ (-33.25 = -33.70 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:28 2006