Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 870,520 – 870,753 |
Length | 233 |
Max. P | 0.994585 |
Location | 870,520 – 870,638 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.01 |
Mean single sequence MFE | -36.52 |
Consensus MFE | -27.01 |
Energy contribution | -30.57 |
Covariance contribution | 3.56 |
Combinations/Pair | 1.09 |
Mean z-score | -2.78 |
Structure conservation index | 0.74 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.980127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 870520 118 + 27905053 AAACCACCGCAUCGCAAAAUGUGGAGCGAAUAACCAAAGAGAAUCGGAUAAAAAGCCGACAGAGCG--AGCAGCUCAUAGAGCAGUUAUGAGCUGGUCGGCUAAGCGAUUCAACUGGGUU .((((..(((..(((.....)))..)))............((((((.......(((((((......--..((((((((((.....)))))))))))))))))...)))))).....)))) ( -40.00) >DroSec_CAF1 45515 106 + 1 AAACCGCCGCAUCGCAAAAUGUGGAGCGAAUAACCGAAGAGAAUCGGAUAAAAAGCCGACAGAUCG--AG------------CAGUUAUGAGCUGGUCGGCUAAGCGAUUCAACUGGGUU .((((.((((((......)))))).((......((((......))))......(((((((((.(((--..------------......))).)).)))))))..))..........)))) ( -30.60) >DroSim_CAF1 44737 118 + 1 AAACCGCCGCAUCGCAAAAUGUGGAGCGAAUAACCGAAGAGAAUCGGAUAAAAAGCCGACAGAUCG--AGCAGCUUAUAGAGCAGUUAUGAGCUGGUCGGCUAAGCGAUUCAACUGGGUU .((((.((((((......)))))).((......((((......))))......(((((((......--..((((((((((.....)))))))))))))))))..))..........)))) ( -38.30) >DroEre_CAF1 44739 120 + 1 AAGCCAUCGCAUCGCAAAAUGUGGAGCGAAUAACUGAGGAGAAUAGGCUAAAAAGCCAACUGAAAGCUGCACGCUCAUGGAGCAGUUAUGAGCUGGUCGGCUAAUAGAUUCAAUUGGGUG ..(((.((((..(((.....)))..))))...........((((.((((....))))..(((..((((((..((((((((.....))))))))..).)))))..))))))).....))). ( -37.20) >consensus AAACCACCGCAUCGCAAAAUGUGGAGCGAAUAACCGAAGAGAAUCGGAUAAAAAGCCGACAGAUCG__AGCAGCUCAUAGAGCAGUUAUGAGCUGGUCGGCUAAGCGAUUCAACUGGGUU .((((..(((..(((.....)))..)))............((((((.......(((((((..........((((((((((.....)))))))))))))))))...)))))).....)))) (-27.01 = -30.57 + 3.56)
Location | 870,520 – 870,638 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.01 |
Mean single sequence MFE | -32.07 |
Consensus MFE | -21.99 |
Energy contribution | -25.55 |
Covariance contribution | 3.56 |
Combinations/Pair | 1.03 |
Mean z-score | -2.18 |
Structure conservation index | 0.69 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860587 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 870520 118 - 27905053 AACCCAGUUGAAUCGCUUAGCCGACCAGCUCAUAACUGCUCUAUGAGCUGCU--CGCUCUGUCGGCUUUUUAUCCGAUUCUCUUUGGUUAUUCGCUCCACAUUUUGCGAUGCGGUGGUUU .((((((..((((((...((((((((((((((((.......)))))))))..--......))))))).......))))))...)))((...((((..........)))).)))))..... ( -37.40) >DroSec_CAF1 45515 106 - 1 AACCCAGUUGAAUCGCUUAGCCGACCAGCUCAUAACUG------------CU--CGAUCUGUCGGCUUUUUAUCCGAUUCUCUUCGGUUAUUCGCUCCACAUUUUGCGAUGCGGCGGUUU ((((..((((.(((((..(((((((.((.((.......------------..--.)).)))))))))......((((......))))..................))))).)))))))). ( -29.20) >DroSim_CAF1 44737 118 - 1 AACCCAGUUGAAUCGCUUAGCCGACCAGCUCAUAACUGCUCUAUAAGCUGCU--CGAUCUGUCGGCUUUUUAUCCGAUUCUCUUCGGUUAUUCGCUCCACAUUUUGCGAUGCGGCGGUUU ((((..((((.(((((..((((((((((((.(((.......))).)))))..--......)))))))......((((......))))..................))))).)))))))). ( -32.80) >DroEre_CAF1 44739 120 - 1 CACCCAAUUGAAUCUAUUAGCCGACCAGCUCAUAACUGCUCCAUGAGCGUGCAGCUUUCAGUUGGCUUUUUAGCCUAUUCUCCUCAGUUAUUCGCUCCACAUUUUGCGAUGCGAUGGCUU .........(((((((..(((((((.(((((((....((((...))))))).))))....)))))))...)))...)))).....((((((.(((((((.....)).)).))))))))). ( -28.90) >consensus AACCCAGUUGAAUCGCUUAGCCGACCAGCUCAUAACUGCUCUAUGAGCUGCU__CGAUCUGUCGGCUUUUUAUCCGAUUCUCUUCGGUUAUUCGCUCCACAUUUUGCGAUGCGGCGGUUU ...((....((((((...((((((((((((((((.......)))))))))..........))))))).......))))))......((...((((..........)))).))...))... (-21.99 = -25.55 + 3.56)
Location | 870,560 – 870,676 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.95 |
Mean single sequence MFE | -37.92 |
Consensus MFE | -23.01 |
Energy contribution | -27.07 |
Covariance contribution | 4.06 |
Combinations/Pair | 1.10 |
Mean z-score | -2.86 |
Structure conservation index | 0.61 |
SVM decision value | 2.49 |
SVM RNA-class probability | 0.994585 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 870560 116 + 27905053 GAAUCGGAUAAAAAGCCGACAGAGCG--AGCAGCUCAUAGAGCAGUUAUGAGCUGGUCGGCUAAGCGAUUCAACUGGGUU--ACAAUAAUUAGCAGGAGCCCCGGCUCCGAAACCAAUGU ((((((.......(((((((......--..((((((((((.....)))))))))))))))))...))))))...((((((--(.......)))).(((((....)))))....))).... ( -42.50) >DroSec_CAF1 45555 104 + 1 GAAUCGGAUAAAAAGCCGACAGAUCG--AG------------CAGUUAUGAGCUGGUCGGCUAAGCGAUUCAACUGGGUU--ACAAUAAUUAGCCGGAGCCCCGGCUCCAAAAGCAAUUU ((((((.......(((((((((.(((--..------------......))).)).)))))))...)))))).....((((--(.......)))))(((((....)))))........... ( -33.00) >DroSim_CAF1 44777 116 + 1 GAAUCGGAUAAAAAGCCGACAGAUCG--AGCAGCUUAUAGAGCAGUUAUGAGCUGGUCGGCUAAGCGAUUCAACUGGGUU--ACAAUAAUUAGCCGGAGCCCCGGCUCCAAAAGCAAUUU ((((((.......(((((((......--..((((((((((.....)))))))))))))))))...)))))).....((((--(.......)))))(((((....)))))........... ( -40.70) >DroEre_CAF1 44779 114 + 1 GAAUAGGCUAAAAAGCCAACUGAAAGCUGCACGCUCAUGGAGCAGUUAUGAGCUGGUCGGCUAAUAGAUUCAAUUGGGUGAUUCGAUGUUUAACCAGAGGACCGGCUCC------AGUUU .....((((....))))(((((..((((((.(.(....)).))))))..(((((((((..((..(((((((((((....)))).)).)))))...))..))))))))))------)))). ( -35.50) >consensus GAAUCGGAUAAAAAGCCGACAGAUCG__AGCAGCUCAUAGAGCAGUUAUGAGCUGGUCGGCUAAGCGAUUCAACUGGGUU__ACAAUAAUUAGCCGGAGCCCCGGCUCCAAAAGCAAUUU ((((((.......(((((((..........((((((((((.....)))))))))))))))))...)))))).....(((.............)))(((((....)))))........... (-23.01 = -27.07 + 4.06)
Location | 870,560 – 870,676 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.95 |
Mean single sequence MFE | -34.09 |
Consensus MFE | -22.46 |
Energy contribution | -25.90 |
Covariance contribution | 3.44 |
Combinations/Pair | 1.11 |
Mean z-score | -2.31 |
Structure conservation index | 0.66 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971542 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 870560 116 - 27905053 ACAUUGGUUUCGGAGCCGGGGCUCCUGCUAAUUAUUGU--AACCCAGUUGAAUCGCUUAGCCGACCAGCUCAUAACUGCUCUAUGAGCUGCU--CGCUCUGUCGGCUUUUUAUCCGAUUC ..(((((....(((((....)))))(((........))--)..))))).((((((...((((((((((((((((.......)))))))))..--......))))))).......)))))) ( -40.90) >DroSec_CAF1 45555 104 - 1 AAAUUGCUUUUGGAGCCGGGGCUCCGGCUAAUUAUUGU--AACCCAGUUGAAUCGCUUAGCCGACCAGCUCAUAACUG------------CU--CGAUCUGUCGGCUUUUUAUCCGAUUC ...((((......((((((....)))))).......))--)).......((((((...(((((((.((.((.......------------..--.)).))))))))).......)))))) ( -29.82) >DroSim_CAF1 44777 116 - 1 AAAUUGCUUUUGGAGCCGGGGCUCCGGCUAAUUAUUGU--AACCCAGUUGAAUCGCUUAGCCGACCAGCUCAUAACUGCUCUAUAAGCUGCU--CGAUCUGUCGGCUUUUUAUCCGAUUC ...((((......((((((....)))))).......))--)).......((((((...((((((((((((.(((.......))).)))))..--......))))))).......)))))) ( -33.42) >DroEre_CAF1 44779 114 - 1 AAACU------GGAGCCGGUCCUCUGGUUAAACAUCGAAUCACCCAAUUGAAUCUAUUAGCCGACCAGCUCAUAACUGCUCCAUGAGCGUGCAGCUUUCAGUUGGCUUUUUAGCCUAUUC .((((------(((((.((((....((((((.....((.(((......))).))..)))))))))).))))......(((.(((....))).)))...)))))((((....))))..... ( -32.20) >consensus AAAUUGCUUUUGGAGCCGGGGCUCCGGCUAAUUAUUGU__AACCCAGUUGAAUCGCUUAGCCGACCAGCUCAUAACUGCUCUAUGAGCUGCU__CGAUCUGUCGGCUUUUUAUCCGAUUC .............((((((....))))))....................((((((...((((((((((((((((.......)))))))))..........))))))).......)))))) (-22.46 = -25.90 + 3.44)
Location | 870,638 – 870,753 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.53 |
Mean single sequence MFE | -38.25 |
Consensus MFE | -28.50 |
Energy contribution | -28.00 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.17 |
Mean z-score | -1.70 |
Structure conservation index | 0.75 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712565 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 870638 115 + 27905053 --ACAAUAAUUAGCAGGAGCCCCGGCUCCGAAACCAAUGUUCGGGCGUGAAUGCAACUGCAUGUGGCUCUUGUUGCCUCUUCGGCCCGAUGUGG---CGACCCCGAACAAUGUAAUUCCA --.............(((((....)))))(((..((.((((((((.((.(((((....)))).).))....((((((.(.(((...))).).))---)))))))))))).))...))).. ( -39.90) >DroSec_CAF1 45621 115 + 1 --ACAAUAAUUAGCCGGAGCCCCGGCUCCAAAAGCAAUUUUCGGGCGUGGAUGCAACUGCAUGUGGCUCUCGUUGCCUCUUCGGCCCGAUGUGG---CGACCCCAAACAAUGUAAUUCCA --..........((((((((....)))))....(((....((((((..(((.(((((.((.....))....))))).)))...)))))))))))---)...................... ( -37.80) >DroSim_CAF1 44855 115 + 1 --ACAAUAAUUAGCCGGAGCCCCGGCUCCAAAAGCAAUUUUCGGGCGUGGAUGCAACUGCAUGUGGCUCUCGUUGCCUCUUCGGCCCGAUGUGG---CGACCCCAAACAAUGUAAUUCCA --..........((((((((....)))))....(((....((((((..(((.(((((.((.....))....))))).)))...)))))))))))---)...................... ( -37.80) >DroEre_CAF1 44859 111 + 1 AUUCGAUGUUUAACCAGAGGACCGGCUCC------AGUUUUCGGGCCCGAAUGCAACUGCAUGCGGCUCUU-UUGCC--UUCGGCCCGAUGGGGUUUCGACCCCAAACAAUGUAAUUCCA ..................(((...((...------.....(((((((.((((((....))))..(((....-..)))--.)))))))))((((((....))))))......))...))). ( -37.50) >consensus __ACAAUAAUUAGCCGGAGCCCCGGCUCCAAAAGCAAUUUUCGGGCGUGAAUGCAACUGCAUGUGGCUCUCGUUGCCUCUUCGGCCCGAUGUGG___CGACCCCAAACAAUGUAAUUCCA ..(((..........(((((....)))))...........((((((.(((((((....))))..(((.......)))...))))))))))))............................ (-28.50 = -28.00 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:38 2006