Locus 21

Sequence ID 3R_DroMel_CAF1
Location 191,084 – 191,204
Length 120
Max. P 0.997618
window36 window37

overview

Window 6

Location 191,084 – 191,204
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.94
Mean single sequence MFE -39.29
Consensus MFE -34.22
Energy contribution -34.80
Covariance contribution 0.58
Combinations/Pair 1.05
Mean z-score -1.62
Structure conservation index 0.87
SVM decision value 0.61
SVM RNA-class probability 0.797587
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 191084 120 + 27905053
CGUGUCUGUCCCGGAUGCCCUAAGCUCAAUAGCCGUUAUCAAAGAGGGCUUUGGCGACAUGGCCGUGUCGAACGCUAUAGGCUCGAAUGUCUUUGAUAUACUAGUGUGCUUAGGUCUUCC
.(((((((...)))))))(((((((.((.(((....(((((((((.((((.((....)).))))...((((..((.....))))))...)))))))))..))).)).)))))))...... ( -42.30)
>DroVir_CAF1 26748 120 + 1
CGUUUCUGUGCCGGAUGCCCUAAGCUCAAUAGCCGUUAUCAAAGAGGGCUACGGCGACAUGGCCGUAUCGAACGCGAUUGGCUCAAAUGUCUUUGAUAUACUAGUGUGCUUAGGUCUUCC
............(((.(.(((((((.((.(((....(((((((((((((((((((......)))))((((....)))).))))).....)))))))))..))).)).))))))).).))) ( -41.60)
>DroGri_CAF1 25335 120 + 1
CGUUUCUGUGCCGGAUGCCCUAAGCUCAAUAGCCGUUAUCAAAGAGGGCUUCGGCGACAUGGCCGUAUCGAAUGCAAUUGGCUCAAAUGUCUUUGAUAUACUAGUGUGCUUAGGACUUCC
............(((.(.(((((((.((.(((....(((((((((.(((....))....((((((.............)))).))..).)))))))))..))).)).))))))).).))) ( -37.22)
>DroWil_CAF1 38235 120 + 1
CGUUUCUGUGCCUGAUGCCCUAAGCUCAAUAGCUGUUAUCAAAGAAGGCUUCGGCGAUAUGGCCGUAUCGAAUGCAAUUGGCUCGAAUGUCUUUGAUAUACUAGUGUGCUUAGGUCUUCC
.............((.(.(((((((.((.(((.(((.((((((((......((((......))))..((((..((.....))))))...)))))))))))))).)).))))))).).)). ( -34.70)
>DroMoj_CAF1 28280 120 + 1
CGUUUCUGUGCCUGAUGCCCUAAGCUCAAUAGCCGUUAUCAAAGAGGGCUACGGCGACAUGGCCGUUUCGAAUGCGAUUGGCUCAAAUGUCUUUGAUAUACUAGUGUGCUUAGGUCUUCC
.............((.(.(((((((.((.(((....(((((((((((((((((((......))))).(((....)))..))))).....)))))))))..))).)).))))))).).)). ( -37.60)
>DroAna_CAF1 24647 120 + 1
CGUGUCCGUCCCGGAUGCCCUAAGCUCAAUAGCCGUUAUCAAAGAGGGCUUCGGCGACAUGGCCGUAUCGAAUGCAAUUGGCUCGAAUGUCUUUGAUAUACUAGUGUGCUUAGGUCUCCC
.(((((((...)))))))(((((((.((.(((....(((((((((.((((..(....)..))))...((((..((.....))))))...)))))))))..))).)).)))))))...... ( -42.30)
>consensus
CGUUUCUGUGCCGGAUGCCCUAAGCUCAAUAGCCGUUAUCAAAGAGGGCUUCGGCGACAUGGCCGUAUCGAAUGCAAUUGGCUCAAAUGUCUUUGAUAUACUAGUGUGCUUAGGUCUUCC
.(..((((...))))..)(((((((.((.(((....((((((((((((((..(((......)))(((.....)))....))))).....)))))))))..))).)).)))))))...... (-34.22 = -34.80 +   0.58)

alignment

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secondary structure

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dotplot

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Window 7

Location 191,084 – 191,204
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 93.94
Mean single sequence MFE -39.73
Consensus MFE -35.46
Energy contribution -35.57
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -2.63
Structure conservation index 0.89
SVM decision value 2.89
SVM RNA-class probability 0.997618
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 191084 120 - 27905053
GGAAGACCUAAGCACACUAGUAUAUCAAAGACAUUCGAGCCUAUAGCGUUCGACACGGCCAUGUCGCCAAAGCCCUCUUUGAUAACGGCUAUUGAGCUUAGGGCAUCCGGGACAGACACG
(((.(.(((((((.((.((((.(((((((((...(((((((....).))))))...(((......))).......)))))))))...)))).)).))))))).).)))............ ( -40.90)
>DroVir_CAF1 26748 120 - 1
GGAAGACCUAAGCACACUAGUAUAUCAAAGACAUUUGAGCCAAUCGCGUUCGAUACGGCCAUGUCGCCGUAGCCCUCUUUGAUAACGGCUAUUGAGCUUAGGGCAUCCGGCACAGAAACG
(((.(.(((((((.((.((((.(((((((((...(((((((....).))))))((((((......))))))....)))))))))...)))).)).))))))).).)))............ ( -43.20)
>DroGri_CAF1 25335 120 - 1
GGAAGUCCUAAGCACACUAGUAUAUCAAAGACAUUUGAGCCAAUUGCAUUCGAUACGGCCAUGUCGCCGAAGCCCUCUUUGAUAACGGCUAUUGAGCUUAGGGCAUCCGGCACAGAAACG
(((.(((((((((.((.((((.(((((((((...((((((.....))..))))..((((......))))......)))))))))...)))).)).))))))))).)))............ ( -41.90)
>DroWil_CAF1 38235 120 - 1
GGAAGACCUAAGCACACUAGUAUAUCAAAGACAUUCGAGCCAAUUGCAUUCGAUACGGCCAUAUCGCCGAAGCCUUCUUUGAUAACAGCUAUUGAGCUUAGGGCAUCAGGCACAGAAACG
......(((((((.((.((((.(((((((((...((((((.....))..))))..((((......))))......)))))))))...)))).)).)))))))((.....))......... ( -35.40)
>DroMoj_CAF1 28280 120 - 1
GGAAGACCUAAGCACACUAGUAUAUCAAAGACAUUUGAGCCAAUCGCAUUCGAAACGGCCAUGUCGCCGUAGCCCUCUUUGAUAACGGCUAUUGAGCUUAGGGCAUCAGGCACAGAAACG
......(((((((.((.((((.(((((((((..(((((((.....))..)))))(((((......))))).....)))))))))...)))).)).)))))))((.....))......... ( -36.70)
>DroAna_CAF1 24647 120 - 1
GGGAGACCUAAGCACACUAGUAUAUCAAAGACAUUCGAGCCAAUUGCAUUCGAUACGGCCAUGUCGCCGAAGCCCUCUUUGAUAACGGCUAUUGAGCUUAGGGCAUCCGGGACGGACACG
.(((..(((((((.((.((((.(((((((((...((((((.....))..))))..((((......))))......)))))))))...)))).)).)))))))...)))............ ( -40.30)
>consensus
GGAAGACCUAAGCACACUAGUAUAUCAAAGACAUUCGAGCCAAUUGCAUUCGAUACGGCCAUGUCGCCGAAGCCCUCUUUGAUAACGGCUAUUGAGCUUAGGGCAUCCGGCACAGAAACG
(((.(.(((((((.((.((((.(((((((((...((((((.....))..))))..((((......))))......)))))))))...)))).)).))))))).).)))............ (-35.46 = -35.57 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:26 2006