Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,975,161 – 5,975,254 |
Length | 93 |
Max. P | 0.866360 |
Location | 5,975,161 – 5,975,254 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 95.27 |
Mean single sequence MFE | -18.90 |
Consensus MFE | -16.22 |
Energy contribution | -16.50 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -1.56 |
Structure conservation index | 0.86 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5975161 93 - 27905053 AAUUGAAUAAUUGCAUUAACUGGCACUGAAAAGUUCCAUGAAUGCGCUGCUUGCUUUCGAAAUGAAUAUUAAGUGCGAAAAUUCCAACAACUG ....((((....(((((...(((.(((....))).)))..)))))((.(((((..(((.....)))...)))))))....))))......... ( -18.90) >DroSec_CAF1 3954 93 - 1 AAUUGAAUAAUUGCAUUAACUGGCACUGAAAAGUUCCAUGAAUGCGCUGCUUGCUUUCGAAAUGAAUAUUAAGUGCAAAAAUUCCAACAACUG ....((((....(((((...(((.(((....))).)))..)))))((.(((((..(((.....)))...)))))))....))))......... ( -18.90) >DroSim_CAF1 4010 93 - 1 AAUUGAAUAAUUGCAUUAACUGGCACUGAAAAGUUCCAUGAAUGCGCUGCUUGCUUUCGAAUUGAAUAUUAAGUGCAAAAAUUCCAACAACUG ....((((....(((((...(((.(((....))).)))..)))))((.(((((..(((.....)))...)))))))....))))......... ( -18.90) >DroEre_CAF1 4111 93 - 1 AAUUGAAUAAUUGCAUUAACUGACACUGAAAAGUUCCAUGAAUGCGCUGGUUGCUUUUGAAAUAAAUAUUAAGUGCACCAAUUCCCACAACUG ....((((....(((((...((..(((....)))..))..)))))..((((.((.(((((........))))).))))))))))......... ( -16.70) >DroYak_CAF1 4357 93 - 1 AAUUGAAUAAUUGCAUUAACUGGCACUGAAAAGUUCCAUGAAAGCGCUGCUUGCUUUCGAAAUAAAUAUUAAGUGCACAAAUUCCAACAACUG ....((((...((((((...(((.(((....))).)))((((((((.....))))))))............))))))...))))......... ( -21.10) >consensus AAUUGAAUAAUUGCAUUAACUGGCACUGAAAAGUUCCAUGAAUGCGCUGCUUGCUUUCGAAAUGAAUAUUAAGUGCAAAAAUUCCAACAACUG ....((((..(((((((...(((.(((....))).)))((((.(((.....))).))))............)))))))..))))......... (-16.22 = -16.50 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:20 2006