| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,972,624 – 5,972,716 |
| Length | 92 |
| Max. P | 0.537167 |
| Location | 5,972,624 – 5,972,716 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 82.62 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -18.23 |
| Energy contribution | -18.98 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537167 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5972624 92 + 27905053 GUUUUCAAGCC-AGUAAAAGUGAAUUGGAAUGGCAGGGAAAUGAAUUAAUUCAGCGACUGUCU-------GUUGAUGGCUAACGAUGCUGUCGAGGUCGC- ((((((..(((-(....((.....))....))))..))))))...........((((((....-------.((((((((.......))))))))))))))- ( -25.10) >DroSec_CAF1 1485 88 + 1 GUUUUCGAGCC-AGUAAAAGUGAACUGGAAUGGCAGGGAAAUGAAUUAAUUCAGCGACU-----------GUCGACGGUUAACGAUGCUGUCGAGGUCGC- ((((((..(((-(.....((....))....))))..))))))...........((((((-----------.((((((((.......))))))))))))))- ( -31.60) >DroSim_CAF1 1501 92 + 1 GUUUUCGAGCC-AGUAAAAGUGAACUGGAAUGGCAGGGAAAUGAAUUAAUUCAGCGACUGCCU-------GUCGAUGGCUAACGAUGCUGUCGAGGUCGC- ((((((..(((-(.....((....))....))))..))))))...........((((((....-------.((((((((.......))))))))))))))- ( -29.40) >DroEre_CAF1 1618 92 + 1 GUAUUCGAGCC-AGCAAAAGUGAACUGGAAUGGCAGGGAAAUGAAUUAAUUCAGCGACUGUCU-------GUCGAUGGCUAGCGAUGCUGUCGAGGUCGC- ...(((..(((-(.....((....))....))))..)))..((((....))))((((((....-------.((((((((.......))))))))))))))- ( -27.30) >DroWil_CAF1 1459 88 + 1 CCCGU-GGGCCAAGUAAAAGUGAACUGAAA-GCCAGAUAACGAAAUUAAUUCGCUCACU-----------GUCAGUAACUAACGAUGCUGCUGAGGUCACU ...((-((.((.......(((((.(((...-..)))....((((.....)))).)))))-----------.((((((.(.......).)))))))))))). ( -20.30) >DroYak_CAF1 1586 99 + 1 GUUUUCGAGCC-AGUAAAAGUGAACUGGAAUGGCAGGGAAAUGAAUUAAUUCAGCGACUGUCUGUAGUCUGUUGAUGGCUAACGAUGCUGUCGAGGUCGC- ((((((..(((-(.....((....))....))))..))))))...........(((((((.(....).)..((((((((.......))))))))))))))- ( -26.70) >consensus GUUUUCGAGCC_AGUAAAAGUGAACUGGAAUGGCAGGGAAAUGAAUUAAUUCAGCGACUGUCU_______GUCGAUGGCUAACGAUGCUGUCGAGGUCGC_ ((((((..(((...(...((....)).)...)))..))))))...........((((((............((((((((.......)))))))))))))). (-18.23 = -18.98 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:19 2006