| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,972,388 – 5,972,478 |
| Length | 90 |
| Max. P | 0.611358 |
| Location | 5,972,388 – 5,972,478 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 72.04 |
| Mean single sequence MFE | -18.97 |
| Consensus MFE | -3.40 |
| Energy contribution | -3.56 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.18 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.611358 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5972388 90 + 27905053 GCACUUGUGGAGAACGAAAUUAAUACACAGC-------------UGUAUAUGGUGUGGCAGCUA-AAAGCAACUAUAGUGUAGUUUGCACAAAAGAUACAU------AAG- ...((((((...................(((-------------(((..........)))))).-...((((((((...)))).))))..........)))------)))- ( -17.30) >DroSec_CAF1 1267 91 + 1 GCAGUUGUGGAGAUCGAAAUUAAUACGCAGC-------------UGAAUAUGAUGUGGCAGGAAUAAAGCAUAUAUAGUAUGGUUUGCACAAAAGAUACAU------CAG- .((((((((................))))))-------------))....(((((((....(..((((.(((((...))))).))))..)......)))))------)).- ( -21.09) >DroSim_CAF1 1285 90 + 1 GCAGUUGUGGAGAACGAAAUUAAUACAGAGC-------------UGAAUAUGAUGUGGCAGCAA-AAAGCAACUAAAGUCUAGUUUGCACAAAAGAUACAU------CAG- .(((((.((................)).)))-------------))....(((((((.......-...(((((((.....))).))))........)))))------)).- ( -17.36) >DroEre_CAF1 1350 98 + 1 GCAGUUUAAGAGAACAAAAUUAUUACACAGCUGUUGCUUACCAGUGAAUAAAGAUUGACAGA-A-AAAGCAACUAUAGUGUAGCUUGCGCAAAAGAU----------CAG- (((((((....)))).......((((((....(((((((....((.(((....))).))...-.-.)))))))....))))))..))).........----------...- ( -19.00) >DroYak_CAF1 1327 94 + 1 GCAGUUUUGCAGAACAAAAUUAAU---------------ACCAAUGAAUAUAAAUUGGCAGG-A-AAAGCAACUGUAGUGCUGUUUGCACAAAAGAUACAUUUACUGCAGA (((((..(((((............---------------.(((((........)))))....-.-.......)))))((((.....)))).............)))))... ( -20.11) >consensus GCAGUUGUGGAGAACGAAAUUAAUACACAGC_____________UGAAUAUGAUGUGGCAGC_A_AAAGCAACUAUAGUGUAGUUUGCACAAAAGAUACAU______CAG_ ....................................................................(((((((.....))).))))....................... ( -3.40 = -3.56 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:18 2006