Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,971,952 – 5,972,045 |
Length | 93 |
Max. P | 0.622584 |
Location | 5,971,952 – 5,972,045 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 84.62 |
Mean single sequence MFE | -27.62 |
Consensus MFE | -18.63 |
Energy contribution | -18.63 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.84 |
Structure conservation index | 0.67 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622584 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5971952 93 + 27905053 UGUGGUUUAGUUUGUCAGUCAGGU-GGUGGGGCUGCAUAUUAACAGGUAGCUCAUAACGUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCA ...(((...(((((..(..(((((-((((((..((((..(((..((....))..)))..)))).))))))))).))..)..))))).))).... ( -31.30) >DroSec_CAF1 847 79 + 1 UGUGGUUUAGUUUGUCAGUCAGGU-GGUGGUGCUGCAUAUUA--------------ACGUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCA ...(((...(((((..(..(((((-(((((.(.(((((....--------------..))))).))))))))).))..)..))))).))).... ( -27.50) >DroSim_CAF1 868 79 + 1 UGUGGUUUAGUUUGUCAGUCAGGU-GGUGGUGCUGCAUAUUA--------------ACGUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCA ...(((...(((((..(..(((((-(((((.(.(((((....--------------..))))).))))))))).))..)..))))).))).... ( -27.50) >DroEre_CAF1 872 90 + 1 UGUGGUUUAGUCAGU----CAGUCAGGUGGUGCUGCAUAUUAACUGGUGCCUCAUAACGUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCA .(((((((.((.(..----((....(((((((.((((..(((...(....)...)))..))))...))))))).))..))).)))))))..... ( -24.10) >DroYak_CAF1 856 94 + 1 UGUGGUUUAGUCAGUCAGUCAGUCAGGUGGUGCUGCAUAUUAACUGGUGGCUCACAACGUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCA .(((((((.((.(((((.(((((...(((......)))....)))))))))).))...(.((((((.((....))))))))))))))))..... ( -27.70) >consensus UGUGGUUUAGUUUGUCAGUCAGGU_GGUGGUGCUGCAUAUUAAC_GGU__CUCA_AACGUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCA ..(((....................(((((.(.(((((....................))))).))))))...((((((....))))))..))) (-18.63 = -18.63 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:17 2006