Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,970,605 – 5,970,794 |
Length | 189 |
Max. P | 0.946568 |
Location | 5,970,605 – 5,970,725 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.91 |
Mean single sequence MFE | -37.70 |
Consensus MFE | -33.10 |
Energy contribution | -34.14 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.02 |
Mean z-score | -1.34 |
Structure conservation index | 0.88 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711316 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5970605 120 + 27905053 UCGGGUAUGGCAGUGAGUCCUACAGAAUGCUCUCGCUGCACGGACAGUUCAUGAGAAUUUGACAUUUAAGUGCGAGUUUGUUCCUCCUUUUGCGGCUAACUGCAGUUUGUAGUUUGCUGU ..(((....((((((((..(........)..))))))))..(((((.....)).(((((((.(((....))))))))))..))))))....(((((.((((((.....)))))).))))) ( -36.20) >DroSec_CAF1 21877 119 + 1 UCGGGAAUGGCAGUGAGUCCUACAGAAUGCUCUCGCUGCACGGACAGUUCAUGAGAAUUUGACAUUUAAGUGCGAGUUUGUUCCUGCU-UUGCGGCUAACUGCAGUUUGUAGUUUGCUGU .(((((((.((((((((..(........)..))))))))...............(((((((.(((....)))))))))))))))))..-..(((((.((((((.....)))))).))))) ( -40.10) >DroSim_CAF1 23561 119 + 1 UCGGGAAUGGCAGUGAGUCCUACAGAAUGCUCUCGCUGCACGGACAGUUCAUGAGAAUUUGACAUUUAAGUGCGAGUUUGUUCCUGCU-UUGCGGCUAACUGCAGUUUGUAGUUUGCUGU .(((((((.((((((((..(........)..))))))))...............(((((((.(((....)))))))))))))))))..-..(((((.((((((.....)))))).))))) ( -40.10) >DroEre_CAF1 23337 120 + 1 UCGGGACUGGCAGUGAGUCCUACAGAAUGCUCUCGCUGCACGGACAGUUCAUGAGAAUUUGACAUUUAAGUGCUAGUGUGUUCCUGCUUUUGCGGCUAACUGCAGUUUGUAGUUUGCCUU ..(((((((((((((((..(........)..)))))))).)))..(((((....)))))..(((((........)))))..))))((....))(((.((((((.....)))))).))).. ( -37.00) >DroYak_CAF1 22549 120 + 1 UCGGGACUGGCAGUGAGUCCUACAGAAUGCACUCGCUGCACGGACAGUUCAUGAGAAUUUGACAUUUAAGUGCCAGUGUGUUCCUGCUCUUGCGGCUAACUGCAGUUUGUAGUUUGCUUU ..((((((((((((((((.(........).))))))))).)))(((((((....))))(((.(((....))).))))))..))))((....))(((.((((((.....)))))).))).. ( -35.10) >consensus UCGGGAAUGGCAGUGAGUCCUACAGAAUGCUCUCGCUGCACGGACAGUUCAUGAGAAUUUGACAUUUAAGUGCGAGUUUGUUCCUGCU_UUGCGGCUAACUGCAGUUUGUAGUUUGCUGU .(((((...((((((((..(........)..))))))))(((((((((((....))))).(.(((....))))..))))))))))).....(((((.((((((.....)))))).))))) (-33.10 = -34.14 + 1.04)
Location | 5,970,645 – 5,970,762 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.13 |
Mean single sequence MFE | -32.80 |
Consensus MFE | -26.86 |
Energy contribution | -28.90 |
Covariance contribution | 2.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.95 |
Structure conservation index | 0.82 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946568 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5970645 117 + 27905053 CGGACAGUUCAUGAGAAUUUGACAUUUAAGUGCGAGUUUGUUCCUCCUUUUGCGGCUAACUGCAGUUUGUAGUUUGCUGUAGUUUUAUGCACA-UUU--UUUUGGCGUGGGCUGAGAUUG ....(((((((((.((((.....))))..(((((((.......)))...(((((((.((((((.....)))))).)))))))......)))).-...--......)))))))))...... ( -32.70) >DroSec_CAF1 21917 116 + 1 CGGACAGUUCAUGAGAAUUUGACAUUUAAGUGCGAGUUUGUUCCUGCU-UUGCGGCUAACUGCAGUUUGUAGUUUGCUGUAGUUUUGUGCAUU-UUU--UUUUGGCGUGGGCUGAGAUUG ....(((((((((.(((((((.(((....)))))))))).....(((.-(((((((.((((((.....)))))).)))))))......)))..-...--......)))))))))...... ( -33.90) >DroSim_CAF1 23601 117 + 1 CGGACAGUUCAUGAGAAUUUGACAUUUAAGUGCGAGUUUGUUCCUGCU-UUGCGGCUAACUGCAGUUUGUAGUUUGCUGUAGUUUUGUGCAUU-UUU-UUUUUGGCGUGGGCUGAGAUUG ....(((((((((.(((((((.(((....)))))))))).....(((.-(((((((.((((((.....)))))).)))))))......)))..-...-.......)))))))))...... ( -33.90) >DroEre_CAF1 23377 115 + 1 CGGACAGUUCAUGAGAAUUUGACAUUUAAGUGCUAGUGUGUUCCUGCUUUUGCGGCUAACUGCAGUUUGUAGUUUGCCUU----UCAUGCAUU-UUUUUGUUUGGCGUGGGCUGAGAUUA ....(((((((((.......((((...((((((............((....))(((.((((((.....)))))).)))..----....)))))-)...))))...)))))))))...... ( -33.90) >DroYak_CAF1 22589 116 + 1 CGGACAGUUCAUGAGAAUUUGACAUUUAAGUGCCAGUGUGUUCCUGCUCUUGCGGCUAACUGCAGUUUGUAGUUUGCUUU----ACUUGCAUACUUUUUUUUUGGCGUGGGCUGAUAUUA ....((((((((....((((((...))))))((((((((((....((....))(((.((((((.....)))))).)))..----....))))))........))))))))))))...... ( -29.60) >consensus CGGACAGUUCAUGAGAAUUUGACAUUUAAGUGCGAGUUUGUUCCUGCU_UUGCGGCUAACUGCAGUUUGUAGUUUGCUGUAGUUUUAUGCAUU_UUU_UUUUUGGCGUGGGCUGAGAUUG ....(((((((((.(((((((.(((....)))))))))).....(((..(((((((.((((((.....)))))).)))))))......)))..............)))))))))...... (-26.86 = -28.90 + 2.04)
Location | 5,970,685 – 5,970,794 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.32 |
Mean single sequence MFE | -32.00 |
Consensus MFE | -24.83 |
Energy contribution | -26.67 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.03 |
Mean z-score | -1.70 |
Structure conservation index | 0.78 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715157 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5970685 109 + 27905053 UUCCUCCUUUUGCGGCUAACUGCAGUUUGUAGUUUGCUGUAGUUUUAUGCACA-UUU--UUUUGGCGUGGGCUGAGAUUGG--------GACACACCCACCCGAAAACAAAAACAAAAAG ......((((((((...(((((((((.........)))))))))...)))...-..(--((((((.(((((.((.(.....--------..).))))))))))))))........))))) ( -30.30) >DroSec_CAF1 21957 116 + 1 UUCCUGCU-UUGCGGCUAACUGCAGUUUGUAGUUUGCUGUAGUUUUGUGCAUU-UUU--UUUUGGCGUGGGCUGAGAUUGGCGAACACGGACACACCCACCCGAAAACAAAAACAAAAAG ........-(((((((.((((((.....)))))).)))))))((((((...((-(.(--((((((.(((((.((.(.(((.......))).).)))))))))))))).))).)))))).. ( -36.20) >DroSim_CAF1 23641 117 + 1 UUCCUGCU-UUGCGGCUAACUGCAGUUUGUAGUUUGCUGUAGUUUUGUGCAUU-UUU-UUUUUGGCGUGGGCUGAGAUUGGCGAACACGGACACACCCACCCGAAAACAAAAACAAAAAG ........-(((((((.((((((.....)))))).)))))))((((((...((-((.-(((((((.(((((.((.(.(((.......))).).)))))))))))))).)))))))))).. ( -35.90) >DroEre_CAF1 23417 109 + 1 UUCCUGCUUUUGCGGCUAACUGCAGUUUGUAGUUUGCCUU----UCAUGCAUU-UUUUUGUUUGGCGUGGGCUGAGAUUAGC------GGACACACCCACCCGAAAACAAAAACAAAAAG ....(((......(((.((((((.....)))))).)))..----....)))..-(((((((((((.((((((((....))))------(....)..))))))))..)))))))....... ( -30.30) >DroYak_CAF1 22629 110 + 1 UUCCUGCUCUUGCGGCUAACUGCAGUUUGUAGUUUGCUUU----ACUUGCAUACUUUUUUUUUGGCGUGGGCUGAUAUUAGC------GGACACACCCACCCGAAAACAAAAACAAAAAG ....(((...((.(((.((((((.....)))))).))).)----)...)))...(((.(((((((.((((((((....))))------(....)..))))))))))).)))......... ( -27.30) >consensus UUCCUGCU_UUGCGGCUAACUGCAGUUUGUAGUUUGCUGUAGUUUUAUGCAUU_UUU_UUUUUGGCGUGGGCUGAGAUUGGC______GGACACACCCACCCGAAAACAAAAACAAAAAG ....(((..(((((((.((((((.....)))))).)))))))......)))...(((.(((((((.(((((.((...................)))))))))))))).)))......... (-24.83 = -26.67 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:16 2006