Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,955,278 – 5,955,376 |
Length | 98 |
Max. P | 0.563619 |
Location | 5,955,278 – 5,955,376 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.55 |
Mean single sequence MFE | -35.70 |
Consensus MFE | -26.33 |
Energy contribution | -26.33 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.11 |
Mean z-score | -1.29 |
Structure conservation index | 0.74 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563619 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5955278 98 - 27905053 CU----------------------UUUCAGGUAAUGGAGAGGCGUCUUGGUGCUUCUCACAGAUUAAAGGCGCCCUAGACGAUGAUGUCACGGAUGCAGACAUCAUAUCCUGCGUGGAAU ..----------------------(((((.(((..(((....(((((.(((((((............)))))))..)))))((((((((.........)))))))).)))))).))))). ( -33.20) >DroVir_CAF1 7449 104 - 1 CU--------------UUU--CGUCGACAGGUAAUGGAGAGGCGUCCUGGUGCUUCUCACAGAUCAAGGGCGCCCUGGACGAUGAUGUCACCGAUGCGGAUAUCAUAUCGUGCGUGGAGU ..--------------...--..((.((.........((.(((((((((((.((......))))).))))))))))(.(((((((((((.........)))))))..)))).))).)).. ( -32.10) >DroGri_CAF1 7684 120 - 1 CUCUCUCUCUCUCUGUUUGCACGCGGACAGGUAAUGGAGAGGCGUCCUGGUGCUUCUCACAGAUCAAGGGCGCCUUAGACGAUGAUGUCACCGAUGCGGAUAUCAUAUCCUGCGUGGAGU ...(((((...((((((((....))))))))....)))))(((((((((((.((......))))).))))))))...(((......))).((.(((((((((...))))).))))))... ( -41.80) >DroWil_CAF1 7845 104 - 1 CU--------------CUU--AUUUCACAGGUAAUGGAGAGGCAUCGUGGUGCUUCUCACAGAUUAAAGGCGCCUUAGACGAUGAUGUCACUGAUGCGGAUAUCAUAUCCUGUGUGGAGU ((--------------((.--....((((((...(((((((((((....))))))))).)).....(((....))).....((((((((.(......)))))))))..)))))).)))). ( -34.60) >DroMoj_CAF1 7246 117 - 1 CUUU-UCAUUUUUUGGUUG--GGUCGACAGGUAAUGGAGAGGCGUCCUGGUGCUUCUCACAGAUCAAGGGCGCCCUAGACGAUGAUGUCACCGAUGCGGAUAUCAUAUCCUGCGUGGAAU ..((-((((......((((--(...((((..((.((.((.(((((((((((.((......))))).))))))))))...)).)).)))).)))))(((((((...))))).)))))))). ( -35.80) >DroPer_CAF1 7618 98 - 1 CU----------------------UUGCAGGUAAUGGAGAGGCGUCCUGGUGCUUCUCACAGAUUAAGGGCGCCUUGGACGAUGAUGUCACAGAUGCGGAUAUCAUAUCCUGCGUGGAAU ((----------------------.((((((...((..((((((((((.(((.....)))......))))))))))...))((((((((.(......)))))))))..)))))).))... ( -36.70) >consensus CU______________UU____GUUGACAGGUAAUGGAGAGGCGUCCUGGUGCUUCUCACAGAUCAAGGGCGCCCUAGACGAUGAUGUCACCGAUGCGGAUAUCAUAUCCUGCGUGGAAU ...........................((.(((..(((..((((((((.(((.....)))......)))))))).......((((((((.........)))))))).)))))).)).... (-26.33 = -26.33 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:10 2006