| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 870,052 – 870,172 |
| Length | 120 |
| Max. P | 0.760290 |
| Location | 870,052 – 870,172 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.83 |
| Mean single sequence MFE | -22.79 |
| Consensus MFE | -18.69 |
| Energy contribution | -18.12 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760290 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 870052 120 + 27905053 UGGUUGGAUUAAAACCGUUAUUAUUCUUAUUUAAGAAUAAAUACCAUGCAUUCUGCUUAAAUCGGAUUACUUUAAUCAACACCUGGCCCGAACACAAAUGUCGCUUUAUGCGAUCUAACU .(((((((((..........((((((((....)))))))).......((((...((.....((((......................))))(((....))).))...))))))))))))) ( -22.65) >DroSec_CAF1 45072 120 + 1 UAUUUGGAUUAAAACCGUUAUUAUUCUUAUUUAAGAAUAAAUACCAUGCAUUCCGCUUUAAUCGGAUUACUUUAAUCAAUAACUGGCCUGAACACAAAUAUCGCUUUGUGUGAUCUAACU ...(((((((....((((((((((((((....))))))))...........((((.......)))).............)))).)).....(((((((......)))))))))))))).. ( -21.70) >DroSim_CAF1 44266 120 + 1 UGGUUGGAUUAAAACCGUUAUUAUUCUUAUUUAAGAAUAAAUACCACGCAUUCCGCUUUAAUCGGAUUACUUUAAUCAAUAACUGGCCUGAACACAAAUAUCGCUUUGUGCGAUCUAACU .(((((((((....((((((((((((((....))))))))...........((((.......)))).............)))).))......((((((......)))))).))))))))) ( -23.80) >DroEre_CAF1 44279 119 + 1 UGGUUGGAUUAAAGCCAUUAUUAUUCUUAUUUAAGAAUAAACACCGUGCACUCUGAUUUAAUCGGAUUAUUUUAAUCAACAACUG-CCUGCAUACAAAUAUCGCUUUAUGCGAUCUAACU .((((((((((((((.....((((((((....)))))))).....(((((.((((((...))))))..........((.....))-..))))).........)))))....))))))))) ( -23.00) >consensus UGGUUGGAUUAAAACCGUUAUUAUUCUUAUUUAAGAAUAAAUACCAUGCAUUCCGCUUUAAUCGGAUUACUUUAAUCAACAACUGGCCUGAACACAAAUAUCGCUUUAUGCGAUCUAACU .((((((((((((.......((((((((....))))))))...........((((.......))))....)))))))......................(((((.....))))).))))) (-18.69 = -18.12 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:34 2006