Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,947,706 – 5,947,821 |
Length | 115 |
Max. P | 0.552995 |
Location | 5,947,706 – 5,947,821 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.32 |
Mean single sequence MFE | -31.58 |
Consensus MFE | -25.94 |
Energy contribution | -26.10 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.15 |
Mean z-score | -1.37 |
Structure conservation index | 0.82 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5947706 115 + 27905053 -----UUAUCCUAACAUCUUUAUAGUUAAUCCCAUAUUACUGCAAGAUGAAAGCCUGGAGAGAUCUGGGUAUUACCUAUAUCCAGUAUUCCAACAUCGCAGCCCGUGUGGUGCGAGAGGC -----.........((((((..((((............)))).))))))...((((((((....((((((((.....))))))))..))))....(((((.((.....))))))).)))) ( -31.40) >DroSec_CAF1 60946 115 + 1 -----AUAUCCUAACAUCUUUAUAGUUAAUCCCAUAUUACUGCAAGAUGAAAGCCUGGAGAGAUGUGGGUAUUACCUAUAUCCAGUAUUCCAACAUCGCAGCCCGAGUGGUGCGAGAGGC -----.........((((((..((((............)))).))))))...((((((((.((((((((.....)))))))).....))))....(((((.((.....))))))).)))) ( -30.30) >DroSim_CAF1 49729 115 + 1 -----AUAUCCUAACAUCUUUAUAGUUAAUCCCAUAUUACUGCAAGAUGAAAGCCUGGAGAGAUGUGGGUAUUACCUAUAUCCAGUAUUCCAACAUCGCAGCCCGAGUGGUGCGAGAGGC -----.........((((((..((((............)))).))))))...((((((((.((((((((.....)))))))).....))))....(((((.((.....))))))).)))) ( -30.30) >DroEre_CAF1 51396 120 + 1 ACACAUUUUCCUACCGACUUUGCAGUGAAUCCCAUAUUACUGCAAGAUGAAAGUGUGGAGAGAUGUAGGUCUUACCUAUAUCCACUAUUCCAACAUCGCAGCCCGCGUGGUGCGAGAGGC .(((((((((........((((((((((........))))))))))..)))))))))..(.((((((((.....)))))))))......((....(((((.((.....)))))))..)). ( -37.30) >DroYak_CAF1 53051 115 + 1 -----UUUUCCUACCAACUUUUUAGUAAAUCCCCUAAUACUGCAAGAUGAAGGUCUGGAGAGAUGCGGGUCUUACCUACAUCCAUUAUUCCAACAUCGCAGCCCGCGUGGUGCGAGAGGC -----(((((.((((((((....))).............((((..((((..((..(((.(.((((..((.....))..))))).)))..))..))))))))......))))).))))).. ( -28.60) >consensus _____UUAUCCUAACAUCUUUAUAGUUAAUCCCAUAUUACUGCAAGAUGAAAGCCUGGAGAGAUGUGGGUAUUACCUAUAUCCAGUAUUCCAACAUCGCAGCCCGAGUGGUGCGAGAGGC ..............((((((..((((............)))).))))))...((((((((.((((((((.....)))))))).....))))....(((((.((.....))))))).)))) (-25.94 = -26.10 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:09 2006