Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,940,721 – 5,940,820 |
Length | 99 |
Max. P | 0.981586 |
Location | 5,940,721 – 5,940,820 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 71.16 |
Mean single sequence MFE | -26.83 |
Consensus MFE | -10.60 |
Energy contribution | -12.05 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.26 |
Mean z-score | -2.44 |
Structure conservation index | 0.40 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981586 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5940721 99 + 27905053 UUUUCCUGAUAGCCAAUACUUCCUAUUUGUA-------UAGGGAGAGUCAUCUGUCGCUGGUUGACUUCUGUUUUACAGAA----AGACCUUCUGCUAUCUGGCACUCC---------A ....((.((((((.....((((((((....)-------))))))).(((....((((.....))))(((((.....)))))----.))).....)))))).))......---------. ( -28.30) >DroSec_CAF1 54121 105 + 1 CUUUCCUGAUAGCCAAUACUUCCUCUUUGUG-------CAGGGAGAGUCAUCUGCAGCGGGUUGACUUCUGUUUUACGGAA----AGACAUUCUGCUAUCUGGCACUCCAUG---CCCA .......((((((.....(((((((.....)-------.)))))).(((.((((.((((((......))))))...)))).----.))).....)))))).((((.....))---)).. ( -28.30) >DroSim_CAF1 42866 105 + 1 CUUUCCUGAUAGCCAAUACUUCCUCUUUGUG-------CAGGGAGAGUCAUCUGCAGCGGGUUGACUUCUGUUUUACAGAA----AGACCUUCUGCUAUCUGGCACUCCAUG---CCCA ...........................((.(-------((.((((.((((...((((.(((((...(((((.....)))))----.))))).))))....)))).)))).))---).)) ( -32.70) >DroEre_CAF1 44499 94 + 1 CUUUCCUGAUAGCCAAUACUUCCUAUUUAUA-------UACGA--AGUCAUCCGCCGCGGGUUGACUUCUGUU-UACAGAA----AGACCU-UUCCUAUCUG-CACU---------CCA .......(((((.....(((((.(((....)-------)).))--)))..........(((((...(((((..-..)))))----.)))))-...)))))..-....---------... ( -17.70) >DroYak_CAF1 45924 104 + 1 CUUUCCUGAUAGCCAAUACUUCCUAUUUAUA-------AACGG--AGUCAUCCGGCGCAGGCUGACUUCUGUU-UACAGAA----AGACCUACUGCUAUCUG-CACUUCAUACAGUCCA .......((((((.........((.(((.((-------(((((--(((((.((......)).)))).))))))-)).))).----)).......))))))..-................ ( -23.29) >DroAna_CAF1 54707 98 + 1 ---UCUCAAUUGUCAAUACAUCCUAUUUGCAUAUACUACAUUAAGUGUCAUCUGUCCCCAGU-GUC--UUGUU-UACUUGAGCCGGGGGCUUCUGCCC-CCGGCAU------------- ---..((((.((.(((.((((.......(((.(((((......)))))....))).....))-)).--)))..-)).))))(((((((((....))))-)))))..------------- ( -30.70) >consensus CUUUCCUGAUAGCCAAUACUUCCUAUUUGUA_______CAGGGAGAGUCAUCUGCCGCGGGUUGACUUCUGUU_UACAGAA____AGACCUUCUGCUAUCUGGCACUCC_______CCA ....((.((((((................................(((((.((......)).)))))((((.....))))..............)))))).))................ (-10.60 = -12.05 + 1.45)
Location | 5,940,721 – 5,940,820 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 71.16 |
Mean single sequence MFE | -29.30 |
Consensus MFE | -8.95 |
Energy contribution | -10.84 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.11 |
Mean z-score | -2.17 |
Structure conservation index | 0.31 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773841 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5940721 99 - 27905053 U---------GGAGUGCCAGAUAGCAGAAGGUCU----UUCUGUAAAACAGAAGUCAACCAGCGACAGAUGACUCUCCCUA-------UACAAAUAGGAAGUAUUGGCUAUCAGGAAAA .---------......((.((((((.((..(((.----(((((.....)))))(((.......)))....)))..))((((-------(....)))))........)))))).)).... ( -26.80) >DroSec_CAF1 54121 105 - 1 UGGG---CAUGGAGUGCCAGAUAGCAGAAUGUCU----UUCCGUAAAACAGAAGUCAACCCGCUGCAGAUGACUCUCCCUG-------CACAAAGAGGAAGUAUUGGCUAUCAGGAAAG ..((---(((...))))).((((((..((((.((----((((......(((.(((((.(........).)))))....)))-------......).))))))))).))))))....... ( -25.00) >DroSim_CAF1 42866 105 - 1 UGGG---CAUGGAGUGCCAGAUAGCAGAAGGUCU----UUCUGUAAAACAGAAGUCAACCCGCUGCAGAUGACUCUCCCUG-------CACAAAGAGGAAGUAUUGGCUAUCAGGAAAG ..((---(((...))))).((((((((..(((.(----(((((.....))))))...)))..)).(((...(((.(((((.-------.....)).)))))).)))))))))....... ( -28.60) >DroEre_CAF1 44499 94 - 1 UGG---------AGUG-CAGAUAGGAA-AGGUCU----UUCUGUA-AACAGAAGUCAACCCGCGGCGGAUGACU--UCGUA-------UAUAAAUAGGAAGUAUUGGCUAUCAGGAAAG ...---------....-..(((((..(-(...((----((((((.-....(((((((.((......)).)))))--))...-------.....))))))))..))..)))))....... ( -24.02) >DroYak_CAF1 45924 104 - 1 UGGACUGUAUGAAGUG-CAGAUAGCAGUAGGUCU----UUCUGUA-AACAGAAGUCAGCCUGCGCCGGAUGACU--CCGUU-------UAUAAAUAGGAAGUAUUGGCUAUCAGGAAAG ((.(((......))).-))((((((((((..(((----(..((((-(((.((.((((.((......)).)))))--).)))-------))))...))))..)))).))))))....... ( -31.70) >DroAna_CAF1 54707 98 - 1 -------------AUGCCGG-GGGCAGAAGCCCCCGGCUCAAGUA-AACAA--GAC-ACUGGGGACAGAUGACACUUAAUGUAGUAUAUGCAAAUAGGAUGUAUUGACAAUUGAGA--- -------------..(((((-((((....))))))))).......-.....--..(-((((....))).))...((((((.((((((((.(.....).))))))))...)))))).--- ( -39.70) >consensus UGG_______GGAGUGCCAGAUAGCAGAAGGUCU____UUCUGUA_AACAGAAGUCAACCCGCGGCAGAUGACUCUCCCUG_______UACAAAUAGGAAGUAUUGGCUAUCAGGAAAG ...................((((((......(((....(((((.....)))))((((.(........).)))).......................))).......))))))....... ( -8.95 = -10.84 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:02 2006