Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,936,866 – 5,936,965 |
Length | 99 |
Max. P | 0.512496 |
Location | 5,936,866 – 5,936,965 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 84.72 |
Mean single sequence MFE | -27.55 |
Consensus MFE | -20.65 |
Energy contribution | -20.40 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.11 |
Mean z-score | -1.80 |
Structure conservation index | 0.75 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5936866 99 + 27905053 CGAUAGUCAUAAAUUACCGCUCGUGUUGACGGUAAUUACUGUCAAGCGGCGAUUUGUUGCGGAAAUGCAGUUUCUGAUUUGAUUUUCCCGCGCCCUUGC .((((((....((((((((.((.....))))))))))))))))..((((.((...(((.(((((((...)))))))....)))..))))))........ ( -28.20) >DroPse_CAF1 53336 93 + 1 UGAUAGUCAUAAAUUGCCAUUCGCGCUGACAGUAAUUACUGUCAAGAGGCGAUUUGUUGCGGAAAUGCA--UUCAGAUUU----UGCCCUCUCACUCAC (((..((.((((((((((..((....(((((((....))))))).)))))))))))).))(((...(((--.........----)))..)))...))). ( -23.30) >DroSec_CAF1 50540 99 + 1 CGAUAGUCAUAAAUUACCGCUCGUGUUGACGGUAAUUACUGUCAAGCGGCGAUUUGUUGCGGAAAUGCAGUUUCUGAUUUGAUUUUCCCGCGCCCUGGC .((((((....((((((((.((.....))))))))))))))))..((((.((...(((.(((((((...)))))))....)))..))))))((....)) ( -29.20) >DroEre_CAF1 40637 89 + 1 CGAUAGUCAUAAAUUACCGCUCGUGUUGACGGUAAUUACUGUCAAGCGGCGAUUUGUUGCGGAAAUGCAGUUUCUGAUUUGAUUUCCCC---------- .....((.((((((..(((((.....(((((((....))))))))))))..)))))).))((((((.(((........)))))))))..---------- ( -28.90) >DroYak_CAF1 42061 99 + 1 CGAUAGUCAUAAAUUACCGCUCGUGUUGACGGUAAUUACUGUCAAGCGGCGAUUUGUUGCGGAAAUGCAGUUUCUGAUUUGAUUUUCCCUCGCUCUUCG (((..((.((((((..(((((.....(((((((....))))))))))))..)))))).))(((((..(((........)))..))))).)))....... ( -28.50) >DroPer_CAF1 56609 93 + 1 UGAUAGUCAUAAAUUGCCAUUCGCGCUGGCAGUAAUUACUGUCAAGAGGCGAUUUGUUGCGGAAAUGCA--UUCAGAUUU----UGCCCUCUCACUCAC (((((((.....(((((((.......)))))))....)))))))((((((((((((.((((....))))--..)))))).----.).)))))....... ( -27.20) >consensus CGAUAGUCAUAAAUUACCGCUCGUGUUGACGGUAAUUACUGUCAAGCGGCGAUUUGUUGCGGAAAUGCAGUUUCUGAUUUGAUUUUCCCUCGCACUCAC ....(((((((((((.(((((.....(((((((....)))))))))))).)))))))((((....))))......)))).................... (-20.65 = -20.40 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:58 2006