Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,935,646 – 5,935,737 |
Length | 91 |
Max. P | 0.677848 |
Location | 5,935,646 – 5,935,737 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 81.00 |
Mean single sequence MFE | -26.18 |
Consensus MFE | -16.86 |
Energy contribution | -16.83 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.15 |
Mean z-score | -1.74 |
Structure conservation index | 0.64 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677848 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5935646 91 + 27905053 UCGGCUGCGCUGCGUUCUCUUCGUUUUGCUUUUGCACAC--UUUCGCAGCUCGGCAACGUUCUACUGGAGUUGCCACCCGUUUACAAUCGGCG ..(((((((..(((.......)))..(((....)))...--...))))))).((((((.(((....)))))))))..(((........))).. ( -27.40) >DroVir_CAF1 99825 89 + 1 UCGGCUGCGCUACGUUCUCUUCGCUUUGCUUUUGGACACUGCUUCGCAGCUCAGCA---UUCGGCA-AUGCUGCCAACUCGAUGCAAUUGUCU ..(((.(((............)))...)))...(((((.(((.(((.((..(((((---((....)-))))))....))))).)))..))))) ( -21.60) >DroGri_CAF1 60796 90 + 1 UCGGCUGCGCUGCGUUCUCUUCGCUUUGCUUUUGCACACUGUUUCGCAGCUCAGCA---UUUAGCACGCGCUGCCAACUCGUUGCACUUACCU ..(((.((((.(((.......)))..((((..(((...(((.....)))....)))---...)))).)))).))).................. ( -26.10) >DroEre_CAF1 39415 91 + 1 UCGGCUGCGCUGCGUUCUCUUCGUUUUGCUUUUGCACAC--UUUCGCAGCUCGGCAACGUUCUACUGGAGUUGCCACCCGUAAGCAAUCGGCG (((..(((((((((........((..(((....))).))--...))))))..((((((.(((....)))))))))........)))..))).. ( -29.80) >DroYak_CAF1 40841 91 + 1 UCGGCUGCGCUGCGUUCUCUUCGUUUUGCUUUUGCACAC--UUUCGCAGCUCGGCAACGUUCUACUGGAGUUGCCACCCGUAUGCAAUCGGCU (((..(((((((((........((..(((....))).))--...))))))..((((((.(((....)))))))))........)))..))).. ( -29.60) >DroMoj_CAF1 62637 89 + 1 UCGGCUGCGCUGCGUUCUCUUCGCUUUGCUUUUGCACACUACUUCGUAGCUCAGCA---UUCGACA-AUGCUGCCAACUUGAUGCAACCUCCU ..((.(((((((((............(((....)))........)))))).(((((---((....)-))))))..........))).)).... ( -22.55) >consensus UCGGCUGCGCUGCGUUCUCUUCGCUUUGCUUUUGCACAC__UUUCGCAGCUCAGCA___UUCUACAGGAGCUGCCAACCGGAUGCAAUCGGCU ...((((.((((((............(((....)))........)))))).))))...................................... (-16.86 = -16.83 + -0.03)
Location | 5,935,646 – 5,935,737 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 81.00 |
Mean single sequence MFE | -26.88 |
Consensus MFE | -16.58 |
Energy contribution | -16.25 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.30 |
Mean z-score | -1.55 |
Structure conservation index | 0.62 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5935646 91 - 27905053 CGCCGAUUGUAAACGGGUGGCAACUCCAGUAGAACGUUGCCGAGCUGCGAAA--GUGUGCAAAAGCAAAACGAAGAGAACGCAGCGCAGCCGA ..(((........)))..((((((...........))))))(.((((((...--((((((....))....(.....).))))..))))))).. ( -26.00) >DroVir_CAF1 99825 89 - 1 AGACAAUUGCAUCGAGUUGGCAGCAU-UGCCGAA---UGCUGAGCUGCGAAGCAGUGUCCAAAAGCAAAGCGAAGAGAACGUAGCGCAGCCGA .((((.((((.((((((...((((((-(....))---))))).))).))).)))))))).....((...(((.......)))...))...... ( -25.50) >DroGri_CAF1 60796 90 - 1 AGGUAAGUGCAACGAGUUGGCAGCGCGUGCUAAA---UGCUGAGCUGCGAAACAGUGUGCAAAAGCAAAGCGAAGAGAACGCAGCGCAGCCGA ................(((((.((((.((((...---(((...((((.....))))..)))..))))..(((.......))).)))).))))) ( -28.30) >DroEre_CAF1 39415 91 - 1 CGCCGAUUGCUUACGGGUGGCAACUCCAGUAGAACGUUGCCGAGCUGCGAAA--GUGUGCAAAAGCAAAACGAAGAGAACGCAGCGCAGCCGA ...((..(((.......(((((((...........))))))).((((((...--...(((....)))...(.....)..)))))))))..)). ( -26.80) >DroYak_CAF1 40841 91 - 1 AGCCGAUUGCAUACGGGUGGCAACUCCAGUAGAACGUUGCCGAGCUGCGAAA--GUGUGCAAAAGCAAAACGAAGAGAACGCAGCGCAGCCGA ...((..(((.......(((((((...........))))))).((((((...--...(((....)))...(.....)..)))))))))..)). ( -27.30) >DroMoj_CAF1 62637 89 - 1 AGGAGGUUGCAUCAAGUUGGCAGCAU-UGUCGAA---UGCUGAGCUACGAAGUAGUGUGCAAAAGCAAAGCGAAGAGAACGCAGCGCAGCCGA ....((((((..........((((((-(....))---))))).(((...........(((....)))..(((.......)))))))))))).. ( -27.40) >consensus AGCCGAUUGCAUACAGGUGGCAACUCCAGUAGAA___UGCCGAGCUGCGAAA__GUGUGCAAAAGCAAAACGAAGAGAACGCAGCGCAGCCGA ...((.((((........((((((....)).......))))..((((((.....((.(((....)))..))........)))))))))).)). (-16.58 = -16.25 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:57 2006