Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,930,235 – 5,930,334 |
Length | 99 |
Max. P | 0.722840 |
Location | 5,930,235 – 5,930,334 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 84.51 |
Mean single sequence MFE | -41.47 |
Consensus MFE | -29.35 |
Energy contribution | -32.48 |
Covariance contribution | 3.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.77 |
Structure conservation index | 0.71 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722840 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5930235 99 - 27905053 GCGGACGUGGUGGUGGCGGUCCUGGAGGUGGCAAUGGCCUGAACCAGCGCUACCACAACAAUCGCCGCGACGAGGAUGACUACAACUCGCGGGGCGAUC ......((.(((((((((...((((....(((....)))....))))))))))))).)).((((((.((.((((...........)))))).)))))). ( -45.90) >DroGri_CAF1 53913 87 - 1 GUGGUCGUGGCGG------------CGGUGGCAACAAUAUGAAUCAGCGCUACCACAACAAUCGGCGCGACGACGAAGAUUACAAUUCCCGCGGCGAUC ..((((((.((((------------.((((((................)))))).....((((..((......))..)))).......)))).)))))) ( -28.39) >DroSec_CAF1 43937 99 - 1 GCGGUCGUGGUGGUGGCGGUCCUGGAGGCGGCAAUGGCCUGAACCAGCGCUACCACAACAAUCGCCGCGACGAGGAUGACUACAACUCGCGGGGCGAUC ......((.(((((((((...((((((((.......))))...))))))))))))).)).((((((.((.((((...........)))))).)))))). ( -45.80) >DroSim_CAF1 32225 99 - 1 GCGGACGUGGUGGUGGCGGUCCUGGAGGCGGCAAUGGCCUGAACCAGCGCUACCACAACAAUCGCCGCGACGAGGAUGACUACAACUCGCGGGGCGAUC ......((.(((((((((...((((((((.......))))...))))))))))))).)).((((((.((.((((...........)))))).)))))). ( -45.80) >consensus GCGGACGUGGUGGUGGCGGUCCUGGAGGCGGCAAUGGCCUGAACCAGCGCUACCACAACAAUCGCCGCGACGAGGAUGACUACAACUCGCGGGGCGAUC ......((.(((((((((...((((((((.......))))...))))))))))))).)).((((((.((.((((...........)))))).)))))). (-29.35 = -32.48 + 3.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:56 2006