| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,925,730 – 5,925,864 |
| Length | 134 |
| Max. P | 0.999382 |
| Location | 5,925,730 – 5,925,834 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 85.61 |
| Mean single sequence MFE | -37.26 |
| Consensus MFE | -36.59 |
| Energy contribution | -36.32 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.70 |
| Structure conservation index | 0.98 |
| SVM decision value | 3.56 |
| SVM RNA-class probability | 0.999382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5925730 104 + 27905053 --------UAAAAU-GCAUC--CU-U-UGAAGGUUUUGGGCUGCGUGUCAGGAGUGCAUUUGCACUGAAACUAUCUG-A-AGCAUGUAAAUGCACUAUCUGGUACGACAUUCCAGAACG --------......-.....--..-.-.....(((((((..(((((..((((((((((((((((.((...(.....)-.-..)))))))))))))).))))..))).))..))))))). ( -39.00) >DroVir_CAF1 87818 104 + 1 --------G-----AGCAUAUCCU-UGAGACAGUUUUGGGCUGCGUGUCAGGAGUGCAUUUGCACUGAAACAUUCUG-AAAGCUUGUAAAUGCACUAUCUGGUACGACAUUCCAGAACG --------.-----..........-.......(((((((..(((((..((((((((((((((((((...........-..))..)))))))))))).))))..))).))..))))))). ( -37.72) >DroGri_CAF1 48378 115 + 1 ACGAAAUCUAGCAUAUCAUC--UU-UGAGACAGUUUUGGGCUGCGUGUCAGGAGUGCAUUUGCACUGAAACAUUCUG-AAAGCUUGUAAAUGCACUAUCUGGUACGACAUUCCAGAACG ...............(((..--..-)))....(((((((..(((((..((((((((((((((((((...........-..))..)))))))))))).))))..))).))..))))))). ( -38.32) >DroSim_CAF1 27715 104 + 1 --------UAAAAU-GCAUC--CU-U-UGAAGGUUUUGGGCUGCGUGUCAGGAGUGCAUUUGCACUGAAACUAUCCA-A-AGCAUGUAAAUGCAUUAUUUGGUACGACAUUCCAGAACG --------......-.....--..-.-.....(((((((..(((((..((((((((((((((((.((..........-.-..)))))))))))))).))))..))).))..))))))). ( -33.22) >DroWil_CAF1 50644 106 + 1 --------AAACAA-GCAUC--CUUU-UGAAGGUUUUGGGCUGCGUGUCAGGAGUGCAUUUGCACUGAAAAUUUCUAAA-AGCUUGUAAAUGCACUAUCUGGUACGACAUUCCAGAACG --------......-.....--....-.....(((((((..(((((..((((((((((((((((((.............-))..)))))))))))).))))..))).))..))))))). ( -37.52) >DroMoj_CAF1 50184 108 + 1 --------UAGCAUAGCAUCCUCU-UGAGACAGUUUUGGGCUGCGUGUCAGGAGUGCAUUUGCACUGAAACAUUCUG-A-AGCUUGUAAAUGCACUAUCUGGUACGACAUUCCAGAACG --------................-.......(((((((..(((((..((((((((((((((((((...........-.-))..)))))))))))).))))..))).))..))))))). ( -37.80) >consensus ________UAACAU_GCAUC__CU_U_AGAAAGUUUUGGGCUGCGUGUCAGGAGUGCAUUUGCACUGAAACAUUCUG_A_AGCUUGUAAAUGCACUAUCUGGUACGACAUUCCAGAACG ................................(((((((..(((((..((((((((((((((((....................)))))))))))).))))..))).))..))))))). (-36.59 = -36.32 + -0.28)
| Location | 5,925,756 – 5,925,864 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.05 |
| Mean single sequence MFE | -31.11 |
| Consensus MFE | -27.69 |
| Energy contribution | -27.42 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.970698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5925756 108 + 27905053 GCUGCGUGUCAGGAGUGCAUUUGCACUGAAACUAUCUG-A-AGCAUGUAAAUGCACUAUCUGGUACGACAUUCCAGAACGUACAAUCUUCCCGAAUGCA-GGAA---AAUGC-GA----- .((((((.((.((((((((((((((.((...(.....)-.-..)))))))))))))..(((((.........)))))...........))).)))))))-)...---.....-..----- ( -32.80) >DroVir_CAF1 87843 118 + 1 GCUGCGUGUCAGGAGUGCAUUUGCACUGAAACAUUCUG-AAAGCUUGUAAAUGCACUAUCUGGUACGACAUUCCAGAACGUACAAUCUUCCCGAAUGCAAACAAAUAAAUGCUGAAUAU- ((..(((..((((((((((((((((((...........-..))..)))))))))))).))))..))).(((((..(((.(......))))..))))).............)).......- ( -30.02) >DroPse_CAF1 41516 116 + 1 GUUGCGUGUCAGGAGUGCAUUUGCACUGAAACAUUCUG-A-AGCUUGUAAAUGCACUAUCUGGUACGACAUUCCAGAACGUACAAUCUUCCCGAAUGCA-AGACAAAUAUGC-GAAUAAA .((((((..((((((((((((((((((...........-.-))..)))))))))))).))))..))(.(((((..(((.(......))))..)))))).-..........))-))..... ( -31.60) >DroSim_CAF1 27741 108 + 1 GCUGCGUGUCAGGAGUGCAUUUGCACUGAAACUAUCCA-A-AGCAUGUAAAUGCAUUAUUUGGUACGACAUUCCAGAACGUACAAUCUUCCCGAAUGCA-GGAA---AAUGC-GA----- .((((((.((.((((((((((((((.((..........-.-..)))))))))))))......(((((...........))))).....))).)))))))-)...---.....-..----- ( -28.22) >DroWil_CAF1 50671 115 + 1 GCUGCGUGUCAGGAGUGCAUUUGCACUGAAAAUUUCUAAA-AGCUUGUAAAUGCACUAUCUGGUACGACAUUCCAGAACGUACAAUCUUCUCGAAUGCA-AGAA---AAUGCUGAAUAAC ((..(((..((((((((((((((((((.............-))..)))))))))))).))))..))).(((((.((((.(......))))).)))))..-....---...))........ ( -32.42) >DroPer_CAF1 44745 115 + 1 GUUGCGUGUCAGGAGUGCAUUUGCACUGAAACAUUCUG-A-AGCUUGUAAAUGCACUAUCUGGUACGACAUUCCAGAACGUACAAUCUUCCCGAAUGCA-AGACAAAUAUGC-GAAUAA- .((((((..((((((((((((((((((...........-.-))..)))))))))))).))))..))(.(((((..(((.(......))))..)))))).-..........))-))....- ( -31.60) >consensus GCUGCGUGUCAGGAGUGCAUUUGCACUGAAACAUUCUG_A_AGCUUGUAAAUGCACUAUCUGGUACGACAUUCCAGAACGUACAAUCUUCCCGAAUGCA_AGAA___AAUGC_GAAUAA_ ....(((..((((((((((((((((....................)))))))))))).))))..))).(((((..(((.(......))))..)))))....................... (-27.69 = -27.42 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:51 2006