Locus 208

Sequence ID 3R_DroMel_CAF1
Location 869,772 – 869,892
Length 120
Max. P 0.600351
window369

overview

Window 9

Location 869,772 – 869,892
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.86
Mean single sequence MFE -45.95
Consensus MFE -40.40
Energy contribution -40.14
Covariance contribution -0.25
Combinations/Pair 1.13
Mean z-score -1.57
Structure conservation index 0.88
SVM decision value 0.13
SVM RNA-class probability 0.600351
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 869772 120 - 27905053
AGAGGGGGAGUGGCGAAAGAGGGCCAAACACCCCCAACGACGGGCUUCAACGCCCUCCAAAGACCAAAGGGUCGGCCCAGUGGGUCUAGACCGCGUGUAUCGCAUCGUUGCGUCACAAAG
...(((((..((((........))))....)))))...(((((((......))))........(((..(((....)))..))))))........(((...((((....)))).))).... ( -46.00)
>DroSec_CAF1 44792 120 - 1
GGAGUGGGAGUGGCAAAAGAGGGUGAAACACCCCCAAUGACGGGCUUCAACGCCCUCCAAAGACCAAAGGGUCGGCCCAGUGGGUCUAGACCGCGUGUAUCGCAUCGUUGCGGCACAAAG
...(((((((.(((......(((((...)))))((......))........)))))))..(((((...(((....)))....)))))....)))((((..((((....)))))))).... ( -44.10)
>DroSim_CAF1 43986 120 - 1
GGAGGGGGAGUGGCAAAAGAGGGUGAAACACCCCCAAUGACGGGCUUCAACGCCCUCCAAAGACCAAAGGGUCGGCCCAGUGGGUCUAGACCGCGUGUAUCGCAUCGUUGCGGCACAAAG
((((((.(...(((......(((((...)))))((......)))))....).))))))..(((((...(((....)))....))))).......((((..((((....)))))))).... ( -45.90)
>DroEre_CAF1 44004 120 - 1
AGAGGGGGAACGGCAAAAGGGGGUGAAACACCCCCAAUGACGGGCUUCAACGCCCUCCAAAGACCAAAGGGUCGGCCCGGUGGGUCUAGACCGCGUGUAUCGCAUCGUUGUGGCACAAAG
...((((((.........(((((((...)))))))......((((......)))))))...((((....))))..))).((((.......))))((((..((((....)))))))).... ( -47.80)
>consensus
AGAGGGGGAGUGGCAAAAGAGGGUGAAACACCCCCAAUGACGGGCUUCAACGCCCUCCAAAGACCAAAGGGUCGGCCCAGUGGGUCUAGACCGCGUGUAUCGCAUCGUUGCGGCACAAAG
.........(((((....(((((((.......(((......)))......)))))))...(((((...(((....)))....))))).).)))).(((..((((....))))..)))... (-40.40 = -40.14 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:33 2006