Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,914,300 – 5,914,404 |
Length | 104 |
Max. P | 0.842599 |
Location | 5,914,300 – 5,914,404 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 84.22 |
Mean single sequence MFE | -26.95 |
Consensus MFE | -16.90 |
Energy contribution | -16.15 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.17 |
Mean z-score | -2.36 |
Structure conservation index | 0.63 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842599 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5914300 104 - 27905053 CACU-UGGGUGUAUCUCUACUAAUUACCAAACCUAAAGCAUUCGUUUUCCCUGUGUGGCUGCGUGAUUCACCCUGUUUUAAAACACGGGGG-AAAACGAAUAUACA ...(-((((((((...........)))...))))))...(((((((((((((((((....(((.(......).)))......)))).))))-)))))))))..... ( -27.40) >DroSec_CAF1 28021 101 - 1 CAUU-UGGGUGUAUCUCUACUAAUAACCAAACCUAAAGAAUUCGUUUUCCCUGGCUCGCUGCGUGAUUCACCCUGUUUUAAAACACGAGGG-AAAACGAAUAU--- ..((-(((((....................)))))))..((((((((((((((..((((...))))..)..(.((((....)))).)))))-)))))))))..--- ( -26.85) >DroSim_CAF1 16366 102 - 1 CAUUUUGGGUGUAUCUCUACUAAUAACCAAACCUAAAGCAUUCGUUUUCCCUGGCUCGCUGCGUGAUUCACCCUGUUUUAAAACACGAGGG-AAAACGAAUAU--- ..((((((((....................)))))))).((((((((((((((..((((...))))..)..(.((((....)))).)))))-)))))))))..--- ( -27.15) >DroYak_CAF1 18593 101 - 1 CAAU-UGGGUGUAUCCCCACCA-UUGCCCAACCUAAAGCAUUUGUUUUCCCUGCUGCGCAGUGUGAUCCACCCUGUUUUAAAACUCAGGGGGAAAAUAGAAUU--- ...(-((((((...........-.))))))).........((((((((((((((...)))).........(((((..........)))))))))))))))...--- ( -26.40) >consensus CAUU_UGGGUGUAUCUCUACUAAUAACCAAACCUAAAGCAUUCGUUUUCCCUGGCUCGCUGCGUGAUUCACCCUGUUUUAAAACACGAGGG_AAAACGAAUAU___ .....(((((....................)))))....(((((((((((((..........(((...)))...(((....)))...)))).)))))))))..... (-16.90 = -16.15 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:46 2006