Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,903,596 – 5,903,689 |
Length | 93 |
Max. P | 0.594590 |
Location | 5,903,596 – 5,903,689 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 81.03 |
Mean single sequence MFE | -23.28 |
Consensus MFE | -14.58 |
Energy contribution | -15.58 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.15 |
Mean z-score | -1.66 |
Structure conservation index | 0.63 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5903596 93 - 27905053 ---AGCAACUCAAGCGAAUUUUUAUU--GCACAUUUGCGUAAUUCGCACUAAGCGUGUCCAAUUAAAGUUUAAUUGGGUAUUCC--AC------UUGCUGGGCUUU ---..........(((((((.....(--(((....)))).)))))))...((((((..(((((((.....)))))))..)).((--(.------....))))))). ( -23.00) >DroPse_CAF1 17047 99 - 1 GCAAACAAAUUACGCGAAAUUUCAUACGAAAUAUUUUCGUAAUUCGCAUCUGGCUUGACUAAUUACAAUUUGAUUGGG-AUUCCUCGC------AUACAUGGCUUG ((.....(((((((.((((((((....))))).))).))))))).((....((.....(((((((.....))))))).-...))..))------.......))... ( -16.40) >DroSec_CAF1 17359 93 - 1 ---AGCAAAUCAGGCGAAUUUGUUUU--GCACAUUUGCAUAAUUCGCACUAAGCGUGUCCAAUUAAAGUUUAAUUGGGUAUUCC--AC------UUGCUGGGCUUU ---........(((((((((.....(--(((....)))).))))))).))((((((..(((((((.....)))))))..)).((--(.------....))))))). ( -23.90) >DroSim_CAF1 5389 93 - 1 ---AGCAAAUCAGGCGAAUUUGUUUU--GCACAUUUGCGUAAUUCGCACUAAGCGUGUCCAAUUAAAGUUUAAUUGGGCAUUCC--AC------UUGCUGGGCUUU ---.((((((...(((((.....)))--))..))))))............(((((((((((((((.....))))))))))).((--(.------....))))))). ( -27.30) >DroEre_CAF1 6851 93 - 1 ---AGCAAAUCAAGCGAUUUUUUAUU--GCACAUUUGCGUAAUUCGCACUAAGCGUGUCCAAUUAAUGUUUAAUUGGGUAUUCC--AU------UUGCUGGGCCUU ---(((((((...((((....((((.--(((....))))))).)))).......((..(((((((.....)))))))..))...--))------)))))....... ( -21.90) >DroYak_CAF1 7133 99 - 1 ---AGCAAAUCAAGCGAAUUUUUAUU--GCACAUUUGCGUAAUUCGCACUAAGCGUGUCCAAUUAAAGUUUAAUUGGGUAUUGU--AUUGGCCAUUGCUGGGCCAU ---.((((.....(((((((.....(--(((....)))).)))))))........(..(((((((.....)))))))..)))))--..(((((.......))))). ( -27.20) >consensus ___AGCAAAUCAAGCGAAUUUUUAUU__GCACAUUUGCGUAAUUCGCACUAAGCGUGUCCAAUUAAAGUUUAAUUGGGUAUUCC__AC______UUGCUGGGCUUU ...(((((.....(((((((........(((....)))..))))))).......(((((((((((.....))))))))))).............)))))....... (-14.58 = -15.58 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:44 2006