Locus 2075

Sequence ID 3R_DroMel_CAF1
Location 5,900,501 – 5,900,600
Length 99
Max. P 0.736776
window3390

overview

Window 0

Location 5,900,501 – 5,900,600
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 80.13
Mean single sequence MFE -33.25
Consensus MFE -20.57
Energy contribution -19.91
Covariance contribution -0.66
Combinations/Pair 1.42
Mean z-score -1.83
Structure conservation index 0.62
SVM decision value 0.44
SVM RNA-class probability 0.736776
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5900501 99 - 27905053
CCCAGACAAUCAGCAGGAUUGCGGAAGGUUAUUUAAUGCAACGCAAGGCCCGAUAAGCAUUCUUCGACAGGCACAAUUGGCUGGCCUGCGAACUGGUUU
.((((...(((.((....(((((....((........))..))))).))..)))........((((.(((((.((......)))))))))))))))... ( -28.00)
>DroSec_CAF1 14219 99 - 1
CCCAGAAAAUCAGCAGGAUUGCGGAAGGUUAUUUAAUGCAACGCAAGAACCGAUAAGCAUUCUGCGACAGGCACAAUUGGCUGGCCUGCGAACUGGUUU
.((((.......(((((((.((....((((......(((...)))..)))).....)))))))))(.(((((.((......))))))))...))))... ( -30.60)
>DroSim_CAF1 2364 99 - 1
CCCAGAAAGUCAGCAGGAUUGCGGAAGGUUAUUUAAUGCAACGCAAGCACCGAUAAGCAUUCUGCGACAGGCACAAUUGGCUGGCCUGCGAACUGGUUU
.((((....((.(((((.(((((((((.(((((...(((.......)))..))))).).))))))))(((.((....)).))).))))))).))))... ( -33.40)
>DroEre_CAF1 3665 99 - 1
UCCAGAAAGUCAGGAGGAUUGCGGAAGGGUAUUUAAUGCCACGCAAGCCCCGAUAAGCAUUCUUCGACAGGCUCAAUUGGCUGGCCUGCGAACUGGGUU
(((((...(((.((.((.(((((....(((((...))))).))))).)))))))........((((.(((((.((......)))))))))))))))).. ( -36.40)
>DroYak_CAF1 3672 99 - 1
CCCAGAAAGUCAGGAGGAUUGCGGAAGGGCAUUUAAUGCCACCCAAACCUCGAUAAGUAUUCUUCGACAGGCUCAAUUGGCUGGCCUGCGAACGGGUUU
(((..........((((.(((.((...(((((...))))).))))).))))...........((((.(((((.((......))))))))))).)))... ( -33.90)
>DroAna_CAF1 11353 99 - 1
ACUUGGAGGGGAGUCGGAUUGUUGGAUUGCCGAUAACCAGACUGAUAACUUUCUGAGUGUUGUGCGUCAGGCCCAGUUGGCUGGCUUGCGAACGGGCUU
(((..(((((.((((((.(((((((....))))))))).)))).....)))))..)))..........((((((.(((.((......)).))))))))) ( -37.20)
>consensus
CCCAGAAAGUCAGCAGGAUUGCGGAAGGGUAUUUAAUGCAACGCAAGCCCCGAUAAGCAUUCUGCGACAGGCACAAUUGGCUGGCCUGCGAACUGGUUU
.((((.......(((((((.((....(((...................))).....)))))))))(.(((((.((......))))))))...))))... (-20.57 = -19.91 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:43 2006