Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,894,651 – 5,894,761 |
Length | 110 |
Max. P | 0.640482 |
Location | 5,894,651 – 5,894,761 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.35 |
Mean single sequence MFE | -30.75 |
Consensus MFE | -21.61 |
Energy contribution | -22.17 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.66 |
Structure conservation index | 0.70 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640482 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5894651 110 + 27905053 CCAUUACCCAACCCUCGCUGAGUAAACAGACACCGUCGACCGCAAGUCAACCAA----CCAACCAAACUCGUGAAUCAACCCUCUUCAGAGU--GACGGCUACGA-GGGGA---UGGGCU ......((((.(((((((((......)))...(((((((.(....)))......----........((((.((((.........))))))))--)))))...)))-)))..---)))).. ( -34.30) >DroSim_CAF1 19239 105 + 1 CCAUUACCCAACCCUCGCUGAGUAAACAGACACCGUCGACCGCAAGUCAAC------------CAAACUCAUGAAUCAACCCUCUUCAGAGA--GUCGGCUACGA-GGGGAGGGUGGGCU ...((((((..(((((((((......))).....(((((((....).....------------....(((.((((.........))))))).--))))))..)))-)))..))))))... ( -35.30) >DroEre_CAF1 19318 113 + 1 CCAUUACCCAACCCUCGCUGAGUAAACAGACACCGUCGACCGCAAGUCAACCAA----ACCAGCAAACUCGUGAAUCCACCCUCUUUAGAGACUGUAGGCUACAAAGGGGA---UGGGCG ......((((.((((.((((.((.....(((...)))((.(....)))......----))))))......(((...((((.(((....)))...)).)).)))...)))).---)))).. ( -26.40) >DroYak_CAF1 18442 117 + 1 CCAUUACCCAACCCUCGCUGCGUAAACAGACACCGUCGACCGCAAGUCAACCAACCAACCAAGCAAACUCGUGAAUCCACCCUCUUUAGAGACUGCAGGCUACGAAGGGGA---UGGGCU ......((((.((((((..((.......(((...)))((.(....)))..............(((.....(((....))).(((....)))..)))..))..)).))))..---)))).. ( -27.00) >consensus CCAUUACCCAACCCUCGCUGAGUAAACAGACACCGUCGACCGCAAGUCAACCAA____CCAAGCAAACUCGUGAAUCAACCCUCUUCAGAGA__GUAGGCUACGA_GGGGA___UGGGCU ......((((....((((.((((.....(((...)))((.(....)))..................))))))))......(((((((..((........))..)))))))....)))).. (-21.61 = -22.17 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:37 2006