Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,890,911 – 5,891,068 |
Length | 157 |
Max. P | 0.820383 |
Location | 5,890,911 – 5,891,028 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.80 |
Mean single sequence MFE | -35.70 |
Consensus MFE | -29.19 |
Energy contribution | -29.70 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.71 |
Structure conservation index | 0.82 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5890911 117 + 27905053 CGUCAUGCGGUUUUCAUCGGGUAUUAUUUUCCAUGGACUUAUUUCUUUAUCAGGAAAGGGGUGGCCUGACAAGGGUCAC--ACCCUCCGAUGGGCA-AUGCCUUUCUUAACGCACAAUCA .....((((.....(((((((......((((((((((........)))))..)))))((((((((((.....)))))))--.))))))))))(((.-..)))........))))...... ( -37.00) >DroSim_CAF1 15623 117 + 1 CGUCAUGCGGUUUUCAUCGCGUAUUAUUUUCCAUGGAUUUAUUUCUUUAUCAGGAAAGGGGUGGCCUGACAAGGGUCAC--ACCCUCCUAUGGGCA-AUGCCUUUCUUAACGCACAAUCA (((.(((((((....)))))))..((((.(((((((.....(((((......)))))((((((((((.....)))))))--.)))..))))))).)-))).........)))........ ( -34.70) >DroEre_CAF1 14808 117 + 1 CGUCAUGCGGUUUUCAUCGCGUAUUAUUUUCCAUGGACUUAUUUC-UGAUCAGGAAAGGGGUGGCCUGUCAAGGGUCAC--ACCCUCCGAUGGGCAAAUGCCUUUCUUAACGCACAAUCA .....((((.....(((((........(((((.(((.(.......-.).))))))))((((((((((.....)))))))--.)))..)))))(((....)))........))))...... ( -36.60) >DroYak_CAF1 15091 118 + 1 CGUCCUGCGGUUUUCAGCGCGUAUUAUUUUCCAUGGACUUAUUUU-GGAUCAGGAAAGGGGUGGCCUGACAUGGGUCACACACCCUCCGAUGGGCA-AUGCCUUUCUUAACGCACAAUCA ......((........))((((.......((((...........)-)))..((((((((.(((((((.....)))))))...(((......)))..-...)))))))).))))....... ( -34.50) >consensus CGUCAUGCGGUUUUCAUCGCGUAUUAUUUUCCAUGGACUUAUUUC_UGAUCAGGAAAGGGGUGGCCUGACAAGGGUCAC__ACCCUCCGAUGGGCA_AUGCCUUUCUUAACGCACAAUCA .....((((.....(((((........(((((.(((.............))))))))((((((((((.....)))))))...)))..)))))(((....)))........))))...... (-29.19 = -29.70 + 0.50)
Location | 5,890,951 – 5,891,068 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.65 |
Mean single sequence MFE | -32.25 |
Consensus MFE | -27.50 |
Energy contribution | -28.00 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.00 |
Structure conservation index | 0.85 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5890951 117 + 27905053 AUUUCUUUAUCAGGAAAGGGGUGGCCUGACAAGGGUCAC--ACCCUCCGAUGGGCA-AUGCCUUUCUUAACGCACAAUCAAAUCACUUUGCGAAUUCAAUUUGGCAAAAAUAAUGUGAAU ............(((..((((((((((.....)))))))--.))))))((.((((.-..)))).))................(((((((((.((......)).)))))......)))).. ( -31.90) >DroSim_CAF1 15663 117 + 1 AUUUCUUUAUCAGGAAAGGGGUGGCCUGACAAGGGUCAC--ACCCUCCUAUGGGCA-AUGCCUUUCUUAACGCACAAUCAAAUCACUUUGCGAAUUCAAUUUGGCAAAAAUAAUGUGAAU ...........((((((((.(((((((.....)))))))--.(((......)))..-...))))))))..............(((((((((.((......)).)))))......)))).. ( -31.70) >DroEre_CAF1 14848 117 + 1 AUUUC-UGAUCAGGAAAGGGGUGGCCUGUCAAGGGUCAC--ACCCUCCGAUGGGCAAAUGCCUUUCUUAACGCACAAUCAAAUCACUUUGGGAAUUCAAUUUGGCAAAAAUAAUGUGAAU .....-.....((((((((.((.(((((((.((((....--.))))..)))))))..)).))))))))..((((........(((..((((....))))..))).........))))... ( -31.23) >DroYak_CAF1 15131 118 + 1 AUUUU-GGAUCAGGAAAGGGGUGGCCUGACAUGGGUCACACACCCUCCGAUGGGCA-AUGCCUUUCUUAACGCACAAUCAAAUCACUUUGCGAAUUCAAUUUGGCAAAAAUAAUGUGCAU .....-.....((((((((.(((((((.....)))))))...(((......)))..-...))))))))...(((((..........(((((.((......)).))))).....))))).. ( -34.16) >consensus AUUUC_UGAUCAGGAAAGGGGUGGCCUGACAAGGGUCAC__ACCCUCCGAUGGGCA_AUGCCUUUCUUAACGCACAAUCAAAUCACUUUGCGAAUUCAAUUUGGCAAAAAUAAUGUGAAU ...........((((((((.(((((((.....)))))))...(((......)))......))))))))..............(((((((((.((......)).)))))......)))).. (-27.50 = -28.00 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:36 2006