Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,889,728 – 5,889,844 |
Length | 116 |
Max. P | 0.535099 |
Location | 5,889,728 – 5,889,844 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 88.65 |
Mean single sequence MFE | -30.90 |
Consensus MFE | -26.00 |
Energy contribution | -27.75 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.17 |
Mean z-score | -1.37 |
Structure conservation index | 0.84 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5889728 116 + 27905053 AUGAAAUUCGUUCGGCUUUCGAUAUUUUUUCCGCUAUUUUACAUAGUAAAUGGCAAUGGAACUGACCAUAAAUCCUUGUGGGAUGACGACGAGGACAAUGAAGUUCAGGUAUUAAG ..((((..(....)..))))(((((((.....(((((((........)))))))....(((((...(((...(((((((.(.....).)))))))..))).))))))))))))... ( -27.80) >DroSim_CAF1 14443 116 + 1 AUGAAUUUCGUUCGGCUUUUGAUAUUUUUUCCGCUGUUUUACAUAGUAAAUGGCAAUGCAACUAACCAUAAAUCCUUGUGGGAUGACGACGAGGAGAAUGAAGCUCAGGUAUUAUG .(((.((((((((.((....((.......)).(((((((........)))))))...)).............(((((((.(.....).))))))))))))))).)))......... ( -27.50) >DroEre_CAF1 13625 116 + 1 AUGAACUUCGUUCGGCUGGCGUUAUUUUUUCCGCUAUUUUACAUAGUAAAUGGCAACGCAACUAGCCAUAAAUCCUUGUGGGAUGACGAUGACGAGGAUGAAGCUCAGGUAUUAUG .(((.((((....((((((((((.........(((((((........))))))))))))...)))))....((((((((.(........).)))))))))))).)))......... ( -32.80) >DroYak_CAF1 13871 116 + 1 AUGAACUUCGUUCGGCUGUCGUUAUUUUUUCCGCUAUUUUAUAUAGUAAAUGGCAAUGCAACUGCUCAUAAAUCCCUGUGGGAUGAGGACGUCGAGGAUGAAGUUCAGGUACUGUG .(((((((((((((((.(((.((((.......(((((((........)))))))..........((((((......)))))))))).))))))))..))))))))))......... ( -35.50) >consensus AUGAACUUCGUUCGGCUGUCGAUAUUUUUUCCGCUAUUUUACAUAGUAAAUGGCAAUGCAACUAACCAUAAAUCCUUGUGGGAUGACGACGACGAGAAUGAAGCUCAGGUAUUAUG .((((((((((((...((((((((((......(((((((........)))))))...........((((((....))))))))))))))))....))))))))))))......... (-26.00 = -27.75 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:33 2006