Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,885,361 – 5,885,460 |
Length | 99 |
Max. P | 0.874960 |
Location | 5,885,361 – 5,885,460 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 78.57 |
Mean single sequence MFE | -28.92 |
Consensus MFE | -16.24 |
Energy contribution | -15.77 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.40 |
Mean z-score | -2.16 |
Structure conservation index | 0.56 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874960 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5885361 99 + 27905053 CUCAAA------AUC---GCCAAGAACACAACAGGUGUG-CGUUCUUGCUGGCCAUCUUAUCU-GGGCCAAAAUUAGUAGACCGUGCACCUAAAUAAGUUCAAAUGUACU ......------...---.....((((.....(((((..-((.(((.(((((((.........-.))))......)))))).))..)))))......))))......... ( -25.80) >DroSec_CAF1 10266 99 + 1 CUCAAA------AUC---GCCAAGAACACAACAGGUGUG-CGUUCCUGCUGGCCGACUUAUCU-GGGCCAAAAUUAGCAGACCAUGCACCUAAACAAGUUCAAAUGUACU ......------...---.....((((......((.(((-(((..(((((((((.(......)-.))))......)))))...))))))))......))))......... ( -23.70) >DroSim_CAF1 9220 99 + 1 CUCAAA------AUC---GCCAAGAACACAACAGGUGUG-CGUUCCUGCUGGCCAACUUAUCU-GGGCCAAAAUUAGCAGACCAUGCACCUAAACAAGUUCAAAUGUACU ......------...---.....((((......((.(((-(((..(((((((((.........-.))))......)))))...))))))))......))))......... ( -22.80) >DroEre_CAF1 9127 99 + 1 CCUGAA------AUG---GUUAAGAACACAACAGGUGUG-CGUUCUUAUUGGUCAGCUAAUCU-GGGCCAAAAUUAGCAGAGCCUGCACCUAACUAGGUGCAAAUGUACU ((((..------.((---........))...)))).(((-((((......((((.((((((.(-......).)))))).)).))(((((((....)))))))))))))). ( -28.00) >DroYak_CAF1 9076 99 + 1 CCUGAA------AUG---GCCGAGAGCACAACAGGUGUG-CGUUCUUACCGGCCAUCUUAUCU-GGGCCAAAAUUAGCAGAGCCUGCACUUAACUGGGUUCGAAUGUACG ((((..------.((---..(....)..)).)))).(((-(((((..(((((((.........-.)))).......((((...)))).........)))..)))))))). ( -30.80) >DroAna_CAF1 11569 109 + 1 CCGAAGCCCCCAACGGGCCCCGAGAACACAACAGGUGUUUAGUGCUUGUUGGCCAUCUUAUCGAUGGCCAAAAUUAGCGACUUCUGCACUUGACC-AGUUCACCUGUACU .((..((((.....))))..)).((((....(((((((..((((((..(((((((((.....)))))))))....))).)))...)))))))...-.))))......... ( -42.40) >consensus CCCAAA______AUC___GCCAAGAACACAACAGGUGUG_CGUUCUUGCUGGCCAUCUUAUCU_GGGCCAAAAUUAGCAGACCCUGCACCUAAACAAGUUCAAAUGUACU .......................((((.....(((((((......(((((((((...........)))))......))))....)))))))......))))......... (-16.24 = -15.77 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:31 2006