Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,881,808 – 5,881,905 |
Length | 97 |
Max. P | 0.536977 |
Location | 5,881,808 – 5,881,905 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 81.43 |
Mean single sequence MFE | -25.50 |
Consensus MFE | -18.33 |
Energy contribution | -18.25 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.18 |
Mean z-score | -1.26 |
Structure conservation index | 0.72 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536977 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5881808 97 + 27905053 AAUGCGAAUUGCUUUCGGCCAACGGUGCCCACAUCGUUUUUAUAGCCAGAACCGAGCUGUAUCUCGGCUAA---CGCGAUUGGAUUUGGACUAUCUAAUC ...(((((.....)))(((((((((((....)))))))..(((((((......).))))))....))))..---.))((((((((.......)))))))) ( -27.20) >DroPse_CAF1 7740 99 + 1 UGUUUGCAUUGGUUUCAGCCAACGGUGCGAACAUCGUU-UUAUAGCCAAAGCCGAACGACUUUUGAGUGAAAUUUAAUGUCGGAUUUGGUUUAUCUAAUC (((((((((((((....))))...))))))))).....-...(((...(((((((.((((..((((((...)))))).))))...)))))))..)))... ( -26.30) >DroSim_CAF1 5662 97 + 1 AAUGCGAAUUGCUUUCGGCCAACGGUGCCCACAUCGUUUUUAUAGCCAGAACCGAGCUGUAUCUCGGCUAA---UGCGAUCGGAUUUGGACUAUCUAAUC .((.(((.((((....(((((((((((....)))))))..(((((((......).))))))....))))..---.))))))).))((((.....)))).. ( -25.50) >DroEre_CAF1 5669 97 + 1 AAUGCGAAUUGCUUUCGGCCAACGGUGCCCACAUCGCUUUUAUAGCCAUAACCGAGCUGUAUCUCGGCUAA---UACGAUCGGAUUUGGACUAUCUAAUC ...((((...((..(((.....))).)).....))))....(((((((...((((..(((((........)---)))).))))...))).))))...... ( -21.40) >DroYak_CAF1 5614 97 + 1 AAUGCGAAUUGCUUUCGGCCAACGGUGCGCACAUCGUUUUUAUAGCCAGAACCGAGCUGUAUUUCGGCUAA---UACGAUCGGAUUUGGACUAUCUAAUC ....((((.....))))...(((((((....)))))))...(((((((((.((((..((((((......))---)))).)))).))))).))))...... ( -27.00) >DroPer_CAF1 7926 99 + 1 UGUUUGCAUUGGUUUCAUCCAACGGUGCAAACAUCGUU-UUAUAGCCAAAGCCGAACGACUUUUGAGUGAAAUUUAAUGUCGGAUUUGGUUUAUCUAAUC (((((((((((...........))))))))))).....-...(((...(((((((.((((..((((((...)))))).))))...)))))))..)))... ( -25.60) >consensus AAUGCGAAUUGCUUUCGGCCAACGGUGCCCACAUCGUUUUUAUAGCCAGAACCGAGCUGUAUCUCGGCUAA___UACGAUCGGAUUUGGACUAUCUAAUC ....((((.....))))...(((((((....)))))))...(((((((((.((((((((.....))))...........)))).))))).))))...... (-18.33 = -18.25 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:29 2006