Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,876,743 – 5,876,863 |
Length | 120 |
Max. P | 0.542089 |
Location | 5,876,743 – 5,876,863 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.56 |
Mean single sequence MFE | -33.50 |
Consensus MFE | -22.29 |
Energy contribution | -22.88 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.36 |
Mean z-score | -1.33 |
Structure conservation index | 0.67 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5876743 120 + 27905053 AUCCACGAGACAAACACCGUGUACCGGGUGAUAUCCCAUGCCAUCGGCUACAGCGGCGAGCCGUCCACAAAGUUUAGCUGGUUCCCCGGCUAUCAGUGGCACAUUAUUCUGUGCAAGUUC ...((((.(((...(.(((((((..(((......)))..(((...))))))).))).)....))))........(((((((....)))))))...)))(((((......)))))...... ( -34.80) >DroVir_CAF1 577 120 + 1 AUCCACGAGACCAAUACGGUCUAUCGUGUCAUUGCACAUGCCAUUGGUUAUAGUGGUGAGCCAUCCACCGAGUUUAGUUGGUUUCCCGGCUACCAGUGGCAUAUAAUUAUCUGCAAGUUU ...(((((((((.....))))..)))))...(((((.((((((((((......(((((.......)))))....(((((((....))))))))))))))))).........))))).... ( -40.40) >DroGri_CAF1 580 120 + 1 AUACACGAGACAAAUACGGUUUAUCGAAUAAUAGCACAUGCCGUUGGCUAUAGCGGUGAGCCAUCCACCGAGUUCAGUUGGUUUCCCGGCUAUCAGUGGCACAUCAUUAUAUGCAAGUUU .......((((......(((((((((....(((((.((......)))))))..)))))))))..((((.((....((((((....)))))).)).)))).................)))) ( -31.60) >DroWil_CAF1 475 120 + 1 AUUCAUGAGACGAAUACAGUUUAUCGUGUGAUGACCCAUGCCAUUGGUUAUAGUGGAGAGCCCACCACAGAAUUUAGUUGGUUUCCUGGCUAUCAGUGGCAUAUUAUUCUAUGUAAAUUU ..((((.(.((((..........)))).).))))...((((((((((.....((((........))))......((((..(....)..)))))))))))))).................. ( -31.40) >DroMoj_CAF1 569 120 + 1 AUACAUGAGACAAACACAGUGUAUAGGGUCAUCGCGCAUGCAAUUGGUUAUAGCGGAGAGCCAUCCACCGAGUUUAGUUGGUUCCCCGGCUACCAGUGGCAUAUUAUUAUAUGCAAGUUU .......((((...(((.(((.((.((.((..(((....((.....))....)))..)).)))).)))......(((((((....)))))))...)))((((((....))))))..)))) ( -31.00) >DroAna_CAF1 565 120 + 1 AUACACGAAACUAACACCGUCUACCGCGUGAUGUCGCAUGCCAUCGGCUACAGCGGUGAACCAUCCACCAAAUUCAGCUGGUUCCCCGGCUACCAGUGGCAUAUUAUCCUUUGUAAAUUC ....(((((................(((......)))(((((((.((.......((((.......))))......((((((....)))))).)).))))))).......)))))...... ( -31.80) >consensus AUACACGAGACAAACACAGUCUAUCGGGUGAUAGCACAUGCCAUUGGCUAUAGCGGUGAGCCAUCCACCGAGUUUAGUUGGUUCCCCGGCUACCAGUGGCAUAUUAUUAUAUGCAAGUUU .........................(((......)))((((((((((...((((((.((((((...............)))))).)).)))))))))))))).................. (-22.29 = -22.88 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:28 2006