Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,875,586 – 5,875,690 |
Length | 104 |
Max. P | 0.550199 |
Location | 5,875,586 – 5,875,690 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.61 |
Mean single sequence MFE | -40.43 |
Consensus MFE | -20.91 |
Energy contribution | -20.88 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.38 |
Mean z-score | -1.72 |
Structure conservation index | 0.52 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550199 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5875586 104 + 27905053 GACAACUUCCUACAGCGAGUGCGUAGCAUGGUCUUUAGCCAGGAGCGACGGCGCAGUCGCACAAGCGAGGAAACGAGCCAGG---AGG---CUGCCGAGCAG-------CCCGUUGA ..((((.((((...((((.(((((.((.((((.....))))...))....))))).))))....((..(....)..)).)))---)((---((((...))))-------)).)))). ( -45.10) >DroGri_CAF1 8867 107 + 1 GAGAACUUCUUGCAGCGGGUGCGUAGCAUGGUCUUUAGCCAGGAUCGAGUGCGUGGCCGCGAAAGCGAUGAGGCCAACCUGGAUG------C----GGGCAAUGUUGUCGAUGAGGA ((.(((((((((((.(((((((...)).(((((((..((((.(........).))))(((....)))..))))))))))))..))------)----))).)).))).))........ ( -39.50) >DroSim_CAF1 21937 107 + 1 GACAACUUCCUACAGCGAGUGCGUAGCAUGGUCUUUAGCCAGGAGCGACGACGCAGUCGCACAAGCGAGGAAACGAGCCAGGAGGAGG---CUGCCGAGGAG-------CCCGAUGA .....((((((...((((.(((((.((.((((.....))))...))....))))).))))....((..(....)..)).)))))).((---((.(....)))-------))...... ( -41.00) >DroEre_CAF1 22734 104 + 1 GACAACUUCCUACAGCGAGUGCGUAGUAUGGUCUUCAGCCAGGAGCGACGACGCAGUCGCACAAGCGAGGAAACUAGCCAGGAGG------AUGUCGAGCAG-------CCCGAAGA ((((.((((((...((((.(((((.((.((.((((.....)))).)))).))))).))))....((.((....)).)).))))))------.))))......-------........ ( -40.10) >DroYak_CAF1 6357 110 + 1 GACAACUUCCUACAGCGUGUGCGUAGCAUUGUCUUCAGCCAGGAGCGACGACGCAGUCGCACAAGCGAGGAAACGAGCCAGGAGGCUGCCGAUGCCGAGCAG-------CCCAAUGA ......(((((...((.((((((..((.((((((((......))).))))).))...)))))).)).)))))......((...((((((((....)).))))-------))...)). ( -41.70) >DroAna_CAF1 6518 104 + 1 GACAACUUCCUGCAACGGGUGCGCAGCAUGGUAUUCAGCCAGGAGAGGCGGCGCAGUCGCACUAGCGACGAUACCAGCCAAGAUG------GAGGAGAGCAA-------GCGGAGGA .....(((((.((...((.(((((.((.((((.....))))......)).)))))(((((....)))))....))..((.....)------)..........-------))))))). ( -35.20) >consensus GACAACUUCCUACAGCGAGUGCGUAGCAUGGUCUUCAGCCAGGAGCGACGACGCAGUCGCACAAGCGAGGAAACGAGCCAGGAGG______CUGCCGAGCAG_______CCCGAUGA .....((((((...((((.(((((.((.((((.....))))...))....))))).))))...)).))))............................................... (-20.91 = -20.88 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:27 2006