Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,874,452 – 5,874,563 |
Length | 111 |
Max. P | 0.914960 |
Location | 5,874,452 – 5,874,563 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 94.58 |
Mean single sequence MFE | -30.17 |
Consensus MFE | -29.67 |
Energy contribution | -29.34 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.08 |
Mean z-score | -1.95 |
Structure conservation index | 0.98 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914960 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5874452 111 - 27905053 UAUUGAGCAUCACUAGCAAGAGCGGAUGUAAUCGGGAGAGCAAUAUCAAUUGGAACUGGCCCUUAUUGGACUAUGUUUUAAUUUCACUUUGUUCUGCUUUUCUGGUUAUUC ......(((((....((....)).)))))((((((((((((((((..((((((((((((.((.....)).))).)))))))))......)))..))))))))))))).... ( -29.90) >DroSec_CAF1 24477 110 - 1 -UUUGAGCAUCACUAGCAAGAGCGGAUGUAGUCGGGAGAGCAAUCUCAAUUGAAACUGGCCCUUAUUGGACUAAGUUUUGAUUUCACUUUGUUUUGCUUUUCUGGUUAUUC -..........(((((.(((((((((...(((.((((((....))))(((..(((((((.((.....)).)).)))))..))))))))....))))))))))))))..... ( -29.80) >DroSim_CAF1 20796 110 - 1 -UUUGAGCAUCACUAGCCAGAGCGGAUGUAAUCGGGAGAGCAAUCUCAAUUGAAACUGGCCCUUAUUGGACUAAGUUUUGAUUUCACUUUGUUUUGCUUUUCUGGUUAUUC -.....(((((....((....)).)))))((((((((((((((...((((..(((((((.((.....)).)).)))))..)).......))..)))))))))))))).... ( -30.81) >consensus _UUUGAGCAUCACUAGCAAGAGCGGAUGUAAUCGGGAGAGCAAUCUCAAUUGAAACUGGCCCUUAUUGGACUAAGUUUUGAUUUCACUUUGUUUUGCUUUUCUGGUUAUUC ......(((((....((....)).)))))((((((((((((((...(((((((((((((.((.....)).))).)))))))).......))..)))))))))))))).... (-29.67 = -29.34 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:26 2006