Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,870,831 – 5,870,947 |
Length | 116 |
Max. P | 0.640545 |
Location | 5,870,831 – 5,870,947 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.80 |
Mean single sequence MFE | -27.25 |
Consensus MFE | -14.76 |
Energy contribution | -16.23 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.41 |
Mean z-score | -1.79 |
Structure conservation index | 0.54 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640545 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5870831 116 + 27905053 UAAGGUAUUAACCCACAAAUCGAUCCUGCGAGGUUACAUAAACGUCUUUCAAUCGUCCGUCCAAGCUGGAGUCUUUCAUAUUGAGCUUGUCCACGAACUUGGGAUCCACUGUAA----UG ...(((....))).(((....((((((..((.(((.....))).))......((((..(..((((((.((..........)).))))))..)))))....))))))...)))..----.. ( -25.00) >DroVir_CAF1 1728 113 + 1 UUG---UUUAACCCACAAAUUGAUCCUGCGAUGUUACAUAAACAUCUUUUAGUCGUGUGUCCAAGCCAGCGUCCUUUGUGUUGAGUUUGUCCACAAAUUUGGGAUCCACUACAA----AU ...---...............((((((..((((((.....)))))).........((((..((((((((((.......))))).)))))..)))).....))))))........----.. ( -27.60) >DroGri_CAF1 2830 113 + 1 UAA---UUUAACCCACAAAUUGAUCCUUUGAUGUUACAUAAACAUCUUUUAGUCGUGUGUCCAAGCUGGCAUCCUUUCUGUUCAGCUUGUCCACAAAUGUGGGAUCCACUAUAA----AU ...---.....((((((....(((.....((((((.....)))))).....))).((((..((((((((((.......)).))))))))..))))..))))))...........----.. ( -34.50) >DroMoj_CAF1 1726 113 + 1 UCG---UUUAACCCACAAAUUGAUCCUUUGAUGUUACAUAAACAUCUUUUAGUCGUGUAUCCAAGCUAGCGUCCUUUGUGUUUAGUUUGUUCACGAAGUCGGGAUCCACUAAAA----UU ...---...............((((((..((((((.....))))))......(((((....((((((((((.......)).))))))))..)))))....))))))........----.. ( -24.20) >DroAna_CAF1 1641 113 + 1 UUCU---GUAACCCACAAAUCGAUCCUGCGAGGUUACAUAAACAUCUUUCAAUCGGCUGUCCAAUGUGGCAUCCUUGGCAUUUAGUUUAUCUACAAACUUCGGGUCAACUGUAA----UA ...(---(((((((.((.........)).).)))))))...(((..........((.((((......)))).))(((((....(((((......)))))....))))).)))..----.. ( -20.80) >DroPer_CAF1 28305 114 + 1 ------UUUAACCCACAAAACGAUCCUGUGACGUUACAUAAACGUCUUUUAGUCGCGUGUCCAAAGUGGUGUCCUUUAGGUUGAGUUUGUCCACGAACUUGGGAUCCACUGGAAGCAAUA ------...............(((.....((((((.....)))))).....)))((...((((..((((.(((((.......(((((((....)))))))))))))))))))).)).... ( -31.41) >consensus UAA___UUUAACCCACAAAUCGAUCCUGCGAUGUUACAUAAACAUCUUUUAGUCGUGUGUCCAAGCUGGCGUCCUUUGUGUUGAGUUUGUCCACAAACUUGGGAUCCACUAUAA____UU .....................((((((..((((((.....)))))).........((((..(((((((((((.....))))).))))))..)))).....)))))).............. (-14.76 = -16.23 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:25 2006