Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,869,756 – 5,869,871 |
Length | 115 |
Max. P | 0.598286 |
Location | 5,869,756 – 5,869,871 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.86 |
Mean single sequence MFE | -32.60 |
Consensus MFE | -18.69 |
Energy contribution | -19.33 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.24 |
Mean z-score | -1.56 |
Structure conservation index | 0.57 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5869756 115 + 27905053 GAGAAUCCUAUAGCUGUAUU--AUUCUAGAGUCCCGAUGGCAAGUACAUUGCCAGUGGAGCCAUCGAUGGUAUCAUUACCAUUUUCGAUGUGGCCGCGGGCAAGGUAGUGCAAACAU ..............((((((--((..(...((((...((((((.....))))))((((...(((((((((((....)))))...))))))...)))))))))..))))))))..... ( -37.70) >DroVir_CAF1 609 105 + 1 -----ACUUUUU-ACA------UUUUUAGAGUCCUGAUGGCAAGUACAUCGCAAAUGGUGCAAUUGAUGGCAUCAUUACCAUCUUCGAUGUGGCUGCUGGCAAAGUAGCGCAAACGC -----......(-(((------((...(((.....((((.......))))...((((((((........))))))))....)))..))))))((((((.....))))))........ ( -26.90) >DroPse_CAF1 28186 111 + 1 -----ACUUAUU-CCAUUUUGCAUUGCAGAGUCCAGAUGGCAAAUACAUAGCCAGCGGAGCCAUUGAUGGCAUCAUCACCAUCUUUGAUGUGGCCGCUGGCAAAGUGGCUCAGACCC -----.......-(((((((((...((....(((...((((.........))))..)))(((((.(((((........)))))......))))).))..)))))))))......... ( -35.30) >DroEre_CAF1 16739 115 + 1 CCAAGACUUUUAGCUAUACU--AUUUUAGAGUCCUGAUGGCAAGUACAUUGCCAGUGGAGCCAUCGAUGGUAUCAUCACCAUUUUCGAUGUGGCCGCGGGCAAGGUUGUGCAAACAU .((.(((((((((.....))--)....)))))).))...(((...((.(((((.((((...((((((((((......))))...))))))...)))).))))).))..)))...... ( -36.00) >DroMoj_CAF1 633 105 + 1 -----AAUUAUU-CCA------AAUGUAGAGUCCUGAUGGUAAAUACAUUGCAAACGGUGCAAUCGAUGGCAUCAUUACCAUAUUCGAUGUGGCUGCUGGCAAAGUGGCCCAAACUC -----.......-...------......((((....(((((((....((((((.....)))))).(((...))).)))))))......((.(((..((.....))..))))).)))) ( -24.40) >DroPer_CAF1 27210 111 + 1 -----AAUUAUU-CCAUUUUGCAUUGCAGAGUCCAGAUGGCAAAUACAUAGCCAGCGGAGCCAUUGAUGGCAUCAUCACCAUCUUUGAUGUGGCCGCUGGCAAAGUGGCACAGACCC -----.......-(((((((((...((....(((...((((.........))))..)))(((((.(((((........)))))......))))).))..)))))))))......... ( -35.30) >consensus _____ACUUAUU_CCAU_UU__AUUGUAGAGUCCUGAUGGCAAAUACAUUGCCAGCGGAGCCAUCGAUGGCAUCAUCACCAUCUUCGAUGUGGCCGCUGGCAAAGUGGCGCAAACAC ...................................((((.......))))((((((((...(((((((((........)))...))))))...))))))))................ (-18.69 = -19.33 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:24 2006