Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,859,879 – 5,859,975 |
Length | 96 |
Max. P | 0.572968 |
Location | 5,859,879 – 5,859,975 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 79.55 |
Mean single sequence MFE | -32.00 |
Consensus MFE | -18.52 |
Energy contribution | -17.87 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.22 |
Mean z-score | -2.03 |
Structure conservation index | 0.58 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572968 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5859879 96 + 27905053 UGGCCAUA----UUUGUGCGUCUGGCUU--G---GCGCUACUUUGUGGUUAAUAAAUGUGGCCAUUAUAAGCCUUGUUCG-GGCGUGGGCGUGGCAUUUAUCCAUA ((((((((----((((((((((......--)---)))).(((....)))..)))))))))))))......(((.((((((-....)))))).)))........... ( -34.30) >DroYak_CAF1 17639 96 + 1 UGGCCGUA----UUUGUGCGUCUGUCUU--G---UCGCUACUUUGUGGUCAAUAAAUGUGGUCAUUAUAAGCCUUGUUCG-GGCGUGGGUGUGGCAUUUAUCCACA ((((((((----((((((((.(......--)---.))).(((....)))..)))))))))))))......((((.....)-)))(((((((.......))))))). ( -29.30) >DroAna_CAF1 17269 102 + 1 UGGCUUUUUCACUCUGUGCCAGUGUCUCUCGCAACUGCUACUUUGUGGUCAAUAAAUGUGGCCAUAAUCAGCCUUGUUCGGGGCGUGGGCGUGGCAUUUAU----A .............(..((((..((((((..((((..(((...(((((((((.......)))))))))..))).))))..))))))..))))..).......----. ( -32.40) >consensus UGGCCAUA____UUUGUGCGUCUGUCUU__G___CCGCUACUUUGUGGUCAAUAAAUGUGGCCAUUAUAAGCCUUGUUCG_GGCGUGGGCGUGGCAUUUAUCCA_A ..((((........)).)).................(((((...(((((((.......))))))).....(((((((.....))).)))))))))........... (-18.52 = -17.87 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:23 2006