Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,853,313 – 5,853,406 |
Length | 93 |
Max. P | 0.778279 |
Location | 5,853,313 – 5,853,406 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 90.21 |
Mean single sequence MFE | -24.87 |
Consensus MFE | -20.81 |
Energy contribution | -21.53 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.09 |
Mean z-score | -2.05 |
Structure conservation index | 0.84 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778279 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5853313 93 + 27905053 ---GAAAACCAAUUUAUAAAUGUCUUUGGGCUUAUGAUGGAUUUCAGAUUGUGUCUGUGAGUCGCGUGGGCCACCAAGACAAC----GAACUAUGUAAAA ---.................((((((.(((((((((...((((((((((...))))).))))).)))))))).).))))))..----............. ( -25.40) >DroSec_CAF1 11014 93 + 1 ---GAAAACCAAUUUAUAAAUGUCUUUGGGCUUAUGAUGGAUUUCAGAUUGUAUCUGUGAGUCGCGUGGGCCAACAAGACAAC----GAACUAUGCCAAA ---.................((((((..((((((((...((((((((((...))))).))))).))))))))...))))))..----............. ( -24.80) >DroSim_CAF1 8693 93 + 1 ---GAAAACCAAUUUAUAAAUGUCUCUGGGCUUAUGAUGGAUUUCAGAUUGUGUCUGUGAGUCGCGUGGGCCACCAAGACAAC----GAACUAUGCAAAA ---.................(((((..(((((((((...((((((((((...))))).))))).)))))))).)..)))))..----............. ( -24.00) >DroEre_CAF1 11328 93 + 1 ---GAAAACCAAUUUAUAAAUGUCUUUGGGCUUAUGAUGGAUUUCAGAUUGUGUCUGUGAGUCGCGUGGGCCACCAAGACAAA----GAACUAUGCAAAA ---.................((((((.(((((((((...((((((((((...))))).))))).)))))))).).))))))..----............. ( -25.40) >DroYak_CAF1 10963 93 + 1 ---GAAAACCAAUUUAUAAUUGUCUUGGGGCUUAUGAUGGAUUUCAGAUUGUGUCUGUGAGUCGCGUGGGCCACCAAGACAAA----GAACUAUGCAAAA ---................(((((((((((((((((...((((((((((...))))).))))).)))))))).))))))))).----............. ( -32.80) >DroAna_CAF1 10802 97 + 1 CAAGAAAACCAAUUUAUAAAUGUCUAUGGGCUUAUGAUGGAUUUCACGUU--CUCAGUGAGUCGCGUGGGU-AUGAAAACAACAACAGAAUUAUGCAAAA ...................((..((((((((((((...((((.....)))--)...))))))).)))))..-)).......................... ( -16.80) >consensus ___GAAAACCAAUUUAUAAAUGUCUUUGGGCUUAUGAUGGAUUUCAGAUUGUGUCUGUGAGUCGCGUGGGCCACCAAGACAAC____GAACUAUGCAAAA ....................((((((..((((((((...(((((((((.....)))).))))).))))))))...))))))................... (-20.81 = -21.53 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:21 2006