Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,848,517 – 5,848,613 |
Length | 96 |
Max. P | 0.974113 |
Location | 5,848,517 – 5,848,613 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 78.91 |
Mean single sequence MFE | -23.42 |
Consensus MFE | -17.92 |
Energy contribution | -17.52 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.12 |
Mean z-score | -2.17 |
Structure conservation index | 0.77 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.974113 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5848517 96 - 27905053 UCUCGGGUUCAAUAAAGUCGAGGCAACGGCUUCGAAUUUGGAUCAAGAUUAUUUUUUAGAAAGGAUUUUAUAAACAAUUUAUUUUUGUGGGUUUCC--------- (((..(((((((.....(((((((....)))))))..))))))).)))..............(((..((....((((.......)))).))..)))--------- ( -20.40) >DroSec_CAF1 6309 102 - 1 UCUCGCGUUCAAUAAAGUCGAGGCAACUGCCUCGAAUUUGGACCAAGAUUAAUUUUUAGAAAGGAUUUUAUAUA---UUUACAUUUAUGGGUUUCAAAUCUUUUC (((.(.((((((.....(((((((....)))))))..))))))).)))..........((((((((((..((((---........))))......)))))))))) ( -26.60) >DroSim_CAF1 3964 93 - 1 UCUUGCGUUCAAUAAAGUCGAGGCAACUGCUUCGAAUUUGGACCAAGAUUAAUUUUUAGAAAGGAUUUUAUAUA---UUUACUUUUAUGGGUUUCA--------- (((((.((((((.....(((((((....)))))))..)))))))))))..............(((.((((((..---........)))))).))).--------- ( -23.30) >DroEre_CAF1 6492 86 - 1 UCUGGUGUUCAAUAAAGUCGAGGCAACGGCCUCGAAUUUGGACCAAGAUUGAGUUU--GCAAGGAUUUCAUAUA---UUGACG-----GGCUUUAA--------- (((.(.((((((.....(((((((....)))))))..))))))).)))..((((((--((((............---))).))-----)))))...--------- ( -24.60) >DroYak_CAF1 6157 87 - 1 UCUGGUGUUCAAUAAAGUCGAGGCAAUGGCUUCGAAUUUGGACCAAGAUGGAAUUU--GCAAGGAUUUGACAUA---UGAACA----UGGGUUUAA--------- .((.(((((((.((((.(((((((....))))))).))))..((.....)).....--................---))))))----).)).....--------- ( -22.20) >consensus UCUCGCGUUCAAUAAAGUCGAGGCAACGGCUUCGAAUUUGGACCAAGAUUAAUUUUUAGAAAGGAUUUUAUAUA___UUUACAUUU_UGGGUUUCA_________ (((.(.((((((.....(((((((....)))))))..))))))).)))......................................................... (-17.92 = -17.52 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:20 2006