Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,840,635 – 5,840,746 |
Length | 111 |
Max. P | 0.741666 |
Location | 5,840,635 – 5,840,746 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 85.17 |
Mean single sequence MFE | -27.27 |
Consensus MFE | -24.87 |
Energy contribution | -25.53 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.34 |
Structure conservation index | 0.91 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741666 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5840635 111 - 27905053 UGCCCGCCAAUCUGCCCACAGAUACGGAGACCGAGGUGGGUCAUAUUUAACUAUUUUCUCUCUUGGCGAUGGGGAGACUAACCUUCUCAUUAUUCUCAUUUAUUUUCCUUG .(((((((.(((((....))))).(((...))).)))))))..........................(((((((((......))))))))).................... ( -28.30) >DroSim_CAF1 1 95 - 1 UGCCCGCCAAUCUGCCCACAGAUACGGAGACCGAGGUGGGUCAUAUUUAACUAUUAUCUCUCUUGGCGAUGGGGAGACUAACCUUCUCAUUAUUU---------------- .(((((((.(((((....))))).(((...))).)))))))..........................(((((((((......)))))))))....---------------- ( -28.30) >DroYak_CAF1 1 95 - 1 UGCCGGCCAAUCUGCCCACAGAUACGGAGACCGAGGUGGGUUCUAUUUAACUAUUGUGUCUCUUGGCGAUUGGGAGACUAACCUUCUCAUUAUUC---------------- ......((((((.(((...(((((((....)...(((((...........)))))))))))...)))))))))((((.......)))).......---------------- ( -25.20) >consensus UGCCCGCCAAUCUGCCCACAGAUACGGAGACCGAGGUGGGUCAUAUUUAACUAUUAUCUCUCUUGGCGAUGGGGAGACUAACCUUCUCAUUAUUC________________ .(((((((.(((((....))))).(((...))).)))))))..........................(((((((((......))))))))).................... (-24.87 = -25.53 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:18 2006