Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,839,690 – 5,839,799 |
Length | 109 |
Max. P | 0.575339 |
Location | 5,839,690 – 5,839,799 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 66.57 |
Mean single sequence MFE | -26.73 |
Consensus MFE | -14.83 |
Energy contribution | -15.73 |
Covariance contribution | 0.90 |
Combinations/Pair | 1.29 |
Mean z-score | -1.37 |
Structure conservation index | 0.55 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5839690 109 + 27905053 CAGCUGGGAUUUAAUAUGGUCCAUUGUGCCGGCAAAGCUGCUGGCUUGGAUUUCCUUCAACUUGCUGUUGAGCUCUUUAUUUGGCUUUCUU-----------UCCACAUCCUCAUCUACA .((.((((((.......((((((....(((((((....))))))).))))))....(((((.....)))))(((........)))......-----------.....)))).)).))... ( -28.10) >DroVir_CAF1 747 115 + 1 CAGCUGUGAUUUGAUAUGAUCCAUUGUACCCGCAAAGCUACUGGCACCAAUUUCCUUAAGCUUGCUGCUCAUUUGUGUGUU-----GGUUUGUGAAUCAGCAUCAGCAUCGUCAUCUAUA .((.(((((((((((.((((.(((...(((((((((((.....)).............(((.....)))..))))))....-----)))..))).))))..))))).)))).)).))... ( -23.50) >DroWil_CAF1 5425 100 + 1 UAGCUGCGAUUUUAUAUGAUCCAUGGUGCCGGCAAAGCUGCUGGCUUGAAUCUCUUUGAGUUUAUUGCUCAAUUCUUUGUU-----AUCCU-----------GCGGCA----CAUCUACA ..((((((.........(((.((....(((((((....))))))).)).)))...((((((.....)))))).........-----....)-----------))))).----........ ( -28.60) >consensus CAGCUGCGAUUUAAUAUGAUCCAUUGUGCCGGCAAAGCUGCUGGCUUGAAUUUCCUUAAGCUUGCUGCUCAAUUCUUUGUU_____AUCUU___________UCAGCAUC_UCAUCUACA ..(((((((((......))))......(((((((....)))))))...........(((((.....)))))...............................)))))............. (-14.83 = -15.73 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:17 2006