Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,828,852 – 5,828,972 |
Length | 120 |
Max. P | 0.993778 |
Location | 5,828,852 – 5,828,972 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.28 |
Mean single sequence MFE | -35.12 |
Consensus MFE | -32.95 |
Energy contribution | -32.53 |
Covariance contribution | -0.42 |
Combinations/Pair | 1.11 |
Mean z-score | -1.75 |
Structure conservation index | 0.94 |
SVM decision value | 2.42 |
SVM RNA-class probability | 0.993778 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5828852 120 + 27905053 UCCUCCUGUUCCCGCUGAAUCUCUUGAGCGAUUCGCAAUCGCUUGAGCUCAGCUUGUCGUGAAGCCUUCGAUAUGGCACGUUGCUUCUUAUGCUCUCGUGUCUCGUUAGCGUAGCUCUCA .............(((((....((..((((((.....))))))..)).))))).....((...((...(((...((((((..((.......))...)))))))))...))...))..... ( -34.60) >DroVir_CAF1 2792 120 + 1 UCCUCCUGUUCGCGCUGUAUUUCUUGAGCGAUUCGCAAUCGCUUGAGUUCAGCUUGUCGUGAAGCCUUCGAUAUGGCACGUUGCUUCUUAUGCUCUCGUGUCUCGUUAGCGUUGCUCUCA .......((.(((((((.....((..((((((.....))))))..))..)))).(((((.........))))).((((((..((.......))...))))))......)))..))..... ( -35.40) >DroGri_CAF1 2562 120 + 1 UCCUCCUGUUCACGCUGUAUUUCUUGAGCGAUUCGCAAUCGCUUGAGCUCAGCCUGUCGUGAAGCCUUCGAUAUGGCACGUUGCUUCUUAUGCUCUCGUGUCUCGUUAGCGUUGCUCUCA ........(((((((((.....((..((((((.....))))))..))..)))).....)))))((...(((...((((((..((.......))...)))))))))...)).......... ( -34.20) >DroWil_CAF1 2671 120 + 1 UCCUCCUGUUCACGCUGUAUUUCUUGAGCGAUUCGCAAUCGCUUGAGCUCAGCUUGUCGUGAAGCCUUCGAUAUGGCACGUUGCUUUUUAUGCUCUCGUGUCUCGUUAGCAUAACUCUCA ........(((((((((.....((..((((((.....))))))..))..)))).....)))))((...(((...((((((..((.......))...)))))))))...)).......... ( -34.20) >DroMoj_CAF1 2293 120 + 1 UCCUCCUGUUCACGCUGUAUUUCUUGAGCGAUUCGCAAUCGCUUGAGUUCAGCCUGUCGCGAAGCCUUCGAUAUGGCACGUUGCUUCUUAUGCUCUCGUGUCUCGUUAGCGUUGCUUUCA ..........((.((((.....((..((((((.....))))))..))..)))).))..((((.((...(((...((((((..((.......))...)))))))))...)).))))..... ( -37.10) >DroAna_CAF1 2529 120 + 1 UCCUCCUGUUCCCGCUGGAUUUCUUGAGCGAUUCGCAGUCGCUUGAGCUCAGCUUGUCGUGAAGCCUUCGAUAUGGCACGUUGCUUCUUAUGCUCGCGUGUCUCGUUAGCGUAGCUCUCA .............(((((....((..((((((.....))))))..)).))))).....((...((...(((...(((((((.((.......))..))))))))))...))...))..... ( -35.20) >consensus UCCUCCUGUUCACGCUGUAUUUCUUGAGCGAUUCGCAAUCGCUUGAGCUCAGCUUGUCGUGAAGCCUUCGAUAUGGCACGUUGCUUCUUAUGCUCUCGUGUCUCGUUAGCGUAGCUCUCA .............((((.....((..((((((.....))))))..))..)))).....((...((...(((...((((((..((.......))...)))))))))...))...))..... (-32.95 = -32.53 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:16 2006