Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,814,824 – 5,814,936 |
Length | 112 |
Max. P | 0.998582 |
Location | 5,814,824 – 5,814,936 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 86.62 |
Mean single sequence MFE | -40.83 |
Consensus MFE | -31.12 |
Energy contribution | -30.04 |
Covariance contribution | -1.08 |
Combinations/Pair | 1.23 |
Mean z-score | -4.31 |
Structure conservation index | 0.76 |
SVM decision value | 3.15 |
SVM RNA-class probability | 0.998582 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5814824 112 + 27905053 AAUCGGAGGUGCUGCAGAAAUCACUUUGCUUGGAAUUCACAUUGAUGUACGUAAGAAUUCA---UCACGAAGUGGUUUCUGUGUUGCCUCCGAUUGAAAGCAGA-AUAUUCAAAUG (((((((((((..(((((((((((((((....((((((................)))))).---...)))))))))))))))..))))))))))).........-........... ( -43.19) >DroSec_CAF1 106299 115 + 1 AAUCGGAGGUGCUGCAGAAAUCACUUUGCUGGGAAUUCACAUUGAUGUACGUAAGAAUUCAUCAUCACUGAGUGGUUUUUUUGUUGCCUCCGUUUGAAAGCAGA-AUAUUCAAACG ....((((((...(((((((((((((((.(((((((((................)))))).))).))..))))))))))..))).))))))(((((((......-...))))))). ( -33.29) >DroSim_CAF1 107105 112 + 1 AAUCGGAGGUGCGGCAGAAAUCACUUUGCUGGGAAUUCACAUUGAUGUACGUAAGAAUUCA---UCACUGAGUGGUUUUUGUGUUGCCUCCGUUUGAAAGCAGA-AUAUUCAAACG ....(((((((..(((((((((((((.(.(((((((((................)))))).---)))).)))))))))))))..)))))))(((((((......-...))))))). ( -38.49) >DroEre_CAF1 103328 108 + 1 ----GGAGGUGGUGCAGAAAUCCCUUUGCUCGGAAUUUACGUUGAUGUACGCAAGAAUUCG---UCACGAAGUGAUUUCUGUGCCGCCUCCGCUUGAAAGCAGA-AUAUUCAAACG ----((((((((..((((((((.(((((..((((.(((.(((......)))..))).))))---...))))).))))))))..))))))))(((....)))...-........... ( -45.10) >DroYak_CAF1 92352 113 + 1 AAUCGGCGGUGGUGCAGAAAUCACUUAGCUCUGAAUUUACAUUGAUGUACGUAAGAAUUCG---UCACGAAGUGAUUUGUGUGCCGCCGCCGCUUAAAAGCAGAAAUAUUUAAACG ..((((((((((..((.(((((((((.....((((((((((....))))(....)))))))---.....))))))))).))..))))))))(((....))).))............ ( -44.10) >consensus AAUCGGAGGUGCUGCAGAAAUCACUUUGCUCGGAAUUCACAUUGAUGUACGUAAGAAUUCA___UCACGAAGUGGUUUCUGUGUUGCCUCCGCUUGAAAGCAGA_AUAUUCAAACG ...((((((((.((((((((((((((......((((((..((........))..)))))).........)))))))))))))).)))))))).(((((..........)))))... (-31.12 = -30.04 + -1.08)
Location | 5,814,824 – 5,814,936 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 86.62 |
Mean single sequence MFE | -32.80 |
Consensus MFE | -22.90 |
Energy contribution | -22.74 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.18 |
Mean z-score | -3.47 |
Structure conservation index | 0.70 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984494 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5814824 112 - 27905053 CAUUUGAAUAU-UCUGCUUUCAAUCGGAGGCAACACAGAAACCACUUCGUGA---UGAAUUCUUACGUACAUCAAUGUGAAUUCCAAGCAAAGUGAUUUCUGCAGCACCUCCGAUU ...........-.........(((((((((.....((((((.(((((.((..---.((((((..((((......))))))))))...)).))))).)))))).....))))))))) ( -34.10) >DroSec_CAF1 106299 115 - 1 CGUUUGAAUAU-UCUGCUUUCAAACGGAGGCAACAAAAAAACCACUCAGUGAUGAUGAAUUCUUACGUACAUCAAUGUGAAUUCCCAGCAAAGUGAUUUCUGCAGCACCUCCGAUU .(((((((...-......)))))))(((((............(((....((((((((........))).)))))..)))......(((.(((....)))))).....))))).... ( -26.20) >DroSim_CAF1 107105 112 - 1 CGUUUGAAUAU-UCUGCUUUCAAACGGAGGCAACACAAAAACCACUCAGUGA---UGAAUUCUUACGUACAUCAAUGUGAAUUCCCAGCAAAGUGAUUUCUGCCGCACCUCCGAUU .(((((((...-......)))))))(((((.....((.(((.((((..((..---.((((((..((((......))))))))))...))..)))).))).)).....))))).... ( -28.00) >DroEre_CAF1 103328 108 - 1 CGUUUGAAUAU-UCUGCUUUCAAGCGGAGGCGGCACAGAAAUCACUUCGUGA---CGAAUUCUUGCGUACAUCAACGUAAAUUCCGAGCAAAGGGAUUUCUGCACCACCUCC---- .(((((((...-......)))))))(((((.((..((((((((.(((.((..---.(((((..(((((......))))))))))...)).))).))))))))..)).)))))---- ( -39.20) >DroYak_CAF1 92352 113 - 1 CGUUUAAAUAUUUCUGCUUUUAAGCGGCGGCGGCACACAAAUCACUUCGUGA---CGAAUUCUUACGUACAUCAAUGUAAAUUCAGAGCUAAGUGAUUUCUGCACCACCGCCGAUU .(((((((..........)))))))(((((.((..((.(((((((((.((..---.(((((..(((((......))))))))))...)).))))))))).))..)).))))).... ( -36.50) >consensus CGUUUGAAUAU_UCUGCUUUCAAACGGAGGCAACACAAAAACCACUUCGUGA___UGAAUUCUUACGUACAUCAAUGUGAAUUCCCAGCAAAGUGAUUUCUGCAGCACCUCCGAUU .(((((((..........)))))))(((((.....((.(((.(((((.((......((((..((((((......))))))))))...)).))))).))).)).....))))).... (-22.90 = -22.74 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:10 2006