Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,806,596 – 5,806,716 |
Length | 120 |
Max. P | 0.615280 |
Location | 5,806,596 – 5,806,716 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -24.80 |
Consensus MFE | -17.21 |
Energy contribution | -18.03 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.06 |
Mean z-score | -2.12 |
Structure conservation index | 0.69 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561432 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5806596 120 + 27905053 AAGCUGCUAGCACCGCACCGAAAAUAAAUGGGAUUAAAGAUGAUAAAAGGUUAUUACAUUUUAUUAACAUAUCCCACAUAAUUUUCACUUUAGAACAUCAUGCUAAUCCGGUUUAUUAGA ((((((.(((((.......((((((...((((((....(.((((((((.((....)).)))))))).)..))))))....))))))......(.....).)))))...))))))...... ( -23.20) >DroSec_CAF1 98110 120 + 1 AAGCUGUUAGCACGGCACCGGAAAUAAAUGGGAUUAAAGAUGAUAAAAGGUUAUUACAUUUUAUUAACAUAUCCCACAUAAUUUUCACUUUAGAACAUCAUGCUAAUCCGGUUUAUUAGA ..(((((....)))))((((((......((((((....(.((((((((.((....)).)))))))).)..))))))(((.((.(((......))).)).)))....))))))........ ( -28.30) >DroSim_CAF1 98833 120 + 1 AAGCUGUUAGCACGGCACCGGAAAUAAAUGGGAUUAAAGAUGAUAAAAGAUUAUUACAUUUUAUUAACACAUCCCACAUAAUUUUCACUUUAGAACAUCAUGCUAAUCCGGUUUAUUAGA ..(((((....)))))((((((......((((((....(.((((((((..........)))))))).)..))))))(((.((.(((......))).)).)))....))))))........ ( -25.90) >DroYak_CAF1 84070 118 + 1 AAGCUGUUGGGA--ACACCGAAAAUAAAUGGGAUUAAGGAUGAUAAAAUGAUAUUACCUUUUAUUAACAUAUCCCACAUAAGUUUCACUUUGGAAUACCAUGCUUAACCGAUUUAUUAUA ......((((..--...)))).(((((((.((.(((((.(((......(((((........)))))...(((.(((...(((.....)))))).))).))).))))))).)))))))... ( -21.80) >consensus AAGCUGUUAGCACGGCACCGAAAAUAAAUGGGAUUAAAGAUGAUAAAAGGUUAUUACAUUUUAUUAACAUAUCCCACAUAAUUUUCACUUUAGAACAUCAUGCUAAUCCGGUUUAUUAGA ((((((((((((.......((((((...((((((....(.((((((((..........)))))))).)..))))))....))))))......(.....).))))))..))))))...... (-17.21 = -18.03 + 0.81)
Location | 5,806,596 – 5,806,716 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -24.88 |
Consensus MFE | -22.11 |
Energy contribution | -21.68 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.18 |
Mean z-score | -1.40 |
Structure conservation index | 0.89 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615280 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5806596 120 - 27905053 UCUAAUAAACCGGAUUAGCAUGAUGUUCUAAAGUGAAAAUUAUGUGGGAUAUGUUAAUAAAAUGUAAUAACCUUUUAUCAUCUUUAAUCCCAUUUAUUUUCGGUGCGGUGCUAGCAGCUU ........((((((...(((((((.(((......))).)))))))(((((..(...((((((.((....)).))))))...)....))))).......))))))((.((....)).)).. ( -24.50) >DroSec_CAF1 98110 120 - 1 UCUAAUAAACCGGAUUAGCAUGAUGUUCUAAAGUGAAAAUUAUGUGGGAUAUGUUAAUAAAAUGUAAUAACCUUUUAUCAUCUUUAAUCCCAUUUAUUUCCGGUGCCGUGCUAACAGCUU ........((((((...(((((((.(((......))).)))))))(((((..(...((((((.((....)).))))))...)....))))).......))))))((.((....)).)).. ( -27.70) >DroSim_CAF1 98833 120 - 1 UCUAAUAAACCGGAUUAGCAUGAUGUUCUAAAGUGAAAAUUAUGUGGGAUGUGUUAAUAAAAUGUAAUAAUCUUUUAUCAUCUUUAAUCCCAUUUAUUUCCGGUGCCGUGCUAACAGCUU ........((((((...(((((((.(((......))).)))))))(((((..(...((((((.((....)).))))))...)....))))).......))))))((.((....)).)).. ( -27.40) >DroYak_CAF1 84070 118 - 1 UAUAAUAAAUCGGUUAAGCAUGGUAUUCCAAAGUGAAACUUAUGUGGGAUAUGUUAAUAAAAGGUAAUAUCAUUUUAUCAUCCUUAAUCCCAUUUAUUUUCGGUGU--UCCCAACAGCUU ...(((((((.(((((((.((((((((((((((.....)))...))))))))....(((((((((...))).))))))))).))))).)).)))))))...(.(((--.....))).).. ( -19.90) >consensus UCUAAUAAACCGGAUUAGCAUGAUGUUCUAAAGUGAAAAUUAUGUGGGAUAUGUUAAUAAAAUGUAAUAACCUUUUAUCAUCUUUAAUCCCAUUUAUUUCCGGUGCCGUGCUAACAGCUU ........((((((...(((((((.(((......))).)))))))(((((..(...((((((.(......).))))))...)....))))).......))))))((.((....)).)).. (-22.11 = -21.68 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:06 2006