Locus 2045

Sequence ID 3R_DroMel_CAF1
Location 5,799,657 – 5,799,762
Length 105
Max. P 0.526832
window3350

overview

Window 0

Location 5,799,657 – 5,799,762
Length 105
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 91.46
Mean single sequence MFE -32.18
Consensus MFE -28.30
Energy contribution -28.22
Covariance contribution -0.08
Combinations/Pair 1.11
Mean z-score -1.18
Structure conservation index 0.88
SVM decision value -0.01
SVM RNA-class probability 0.526832
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5799657 105 + 27905053
UUAUCAUUCGCAAUUAGACGCGUUGACACUCGACUUGGCCAACUUU-UUAGCGG-----UUCAGGCCAGGCCAG-----GCCAGUCAGUCGAAAAGUGGCGAGUUAAGAGCGAAAA
......(((((..((((...(((((....(((((((((((((((..-.....))-----))..(((...))).)-----))))...))))))....)))))..))))..))))).. ( -32.30)
>DroSec_CAF1 91333 105 + 1
UUAUCAUUCGCAAUUAGACGCGUUGACACUCGACUUGGCCAACUUU-UUAGCGG-----UUUAGGCCAGGCCAA-----GCCAGUCAGUCGAAAAGUGGCGAGUUGAGAGCGAAAA
......(((((..........(....).(((((((((.(((.((((-(..((((-----(....))).(((...-----))).....))..))))))))))))))))).))))).. ( -35.30)
>DroSim_CAF1 92018 105 + 1
UUAUCAUUCGCAAUUAGACGCGUUGACACUCGACUUGGCCAACUUU-UUAGCGG-----UUCAGGCCAGGCCAG-----GCCAGUCAGUCGAAAAGUGGCGAGUUAAGAGCGAAAA
......(((((..((((...(((((....(((((((((((((((..-.....))-----))..(((...))).)-----))))...))))))....)))))..))))..))))).. ( -32.30)
>DroEre_CAF1 88132 111 + 1
UUAUCAUUCGCAAUUAGACGCGUUGACACUCGACUUGGCCAACUUUUUUAGCAGUUCAGUUCAGUUCAGGCCAG-----GCCAUUCAGUUGAAAAGUGGCGAGUUAAGAGCGAAAA
......(((((..((((...(((((....(((((((((((((((........))))..(..(......)..).)-----))))...))))))....)))))..))))..))))).. ( -27.10)
>DroYak_CAF1 77106 116 + 1
UUAUCAUUCGCAAUUAGACGCGUUGACACUCGACUUGGCCAACUUUUUUAGCAGCUCAGUUCAGGCCAGGCCAGGCUGGGCCAGUCAGUCGAAAAGUGGCAAGUUAAGAGCGAAAA
......(((((..........(....).((..(((((.(((.((((((..((.((((((((..(((...))).))))))))..)).....))))))))))))))..)).))))).. ( -33.90)
>consensus
UUAUCAUUCGCAAUUAGACGCGUUGACACUCGACUUGGCCAACUUU_UUAGCGG_____UUCAGGCCAGGCCAG_____GCCAGUCAGUCGAAAAGUGGCGAGUUAAGAGCGAAAA
......(((((..((((...(((((....(((((((((((.......................)))))(((........)))....))))))....)))))..))))..))))).. (-28.30 = -28.22 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:02 2006