| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,798,531 – 5,798,629 |
| Length | 98 |
| Max. P | 0.994596 |
| Location | 5,798,531 – 5,798,629 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 69.27 |
| Mean single sequence MFE | -33.20 |
| Consensus MFE | -8.60 |
| Energy contribution | -6.72 |
| Covariance contribution | -1.88 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.26 |
| SVM decision value | 2.49 |
| SVM RNA-class probability | 0.994596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5798531 98 - 27905053 AGGGAAAGUGAAUAAAACU----UCAAAGGGG-AUGGAUGGUGGUUAGG---CGGCUGGGCAGGGGUAUACCGACCUG----GUCGCCGGCACCUGGCAAUUUUCAUAAA ...(((.((.......)))----))...(..(-((.(..((((....((---((((..((..((......))..))..----))))))..))))...).)))..)..... ( -34.20) >DroPse_CAF1 97315 103 - 1 AGCGAAAGUGAAUAAAAAAAAAAAAUACAGAGUGUGAGAGACGGCUGGU---UGC----UCGGGGUGCUAGCGAUCUAGCCGGCCCCUGGCACCUGGCAAUUUUCAUAAA .((....)).......................((((((((...((..(.---(((----.(((((.((..((......))..)))))))))).)..))..)))))))).. ( -36.80) >DroSec_CAF1 90231 99 - 1 AGGGAAAGUGAAUAAAACG----GCUAGGGGGUAUGGUUGGUGGUUAGC---UGGCUGGGCUGGGGCAUGCCGACCUG----GUCGCCGGCACCUGGCAAUUUUCAUAAA ...((((((.........(----((((((.((((((.((.(.(.((((.---...)))).)).)).))))))..))))----)))(((((...))))).))))))..... ( -35.60) >DroEre_CAF1 86995 100 - 1 AGGGAAAGUGAAUAAAGUG----AAUAAAGUGAAUAA--AGUGGCAAGGGGGAGGGUGGGCUGGUGUAUGCCGACCUG----GUCGCCGGCACCUGGCAAUUUUCAUAAA ...((((((..........----..............--..........((..((((.(((........))).)))).----.))(((((...))))).))))))..... ( -24.20) >DroPer_CAF1 96781 101 - 1 AGCGAAAGUGAAUAAAAA--AAAAAUACAGAGUGUGAGAGACGGUUGGU---UGC----UCGGGGUGCUAGCGAUCUAGCCGGCCCCUGGCACCUGGCAAUUUUCAUAAA .((....)).........--............((((((((...((..(.---(((----.(((((.((..((......))..)))))))))).)..))..)))))))).. ( -35.20) >consensus AGGGAAAGUGAAUAAAAAG____AAUAAAGAGUAUGAGAGGUGGUUAGG___UGG_UGGGCGGGGGGAUACCGACCUG____GUCGCCGGCACCUGGCAAUUUUCAUAAA ...((((((........................((.....)).(((((.....((....((....))...))..........((.....))..))))).))))))..... ( -8.60 = -6.72 + -1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:01 2006