Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,794,976 – 5,795,068 |
Length | 92 |
Max. P | 0.913826 |
Location | 5,794,976 – 5,795,068 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 80.90 |
Mean single sequence MFE | -22.61 |
Consensus MFE | -13.34 |
Energy contribution | -13.06 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.36 |
Mean z-score | -2.34 |
Structure conservation index | 0.59 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5794976 92 + 27905053 UCUACCCUCGUGCUGUCUCUUUCGCUCGGCACUGUGUCAUCUCCCUCUAAAGUCCACA-UAUGCCCCCUU-------GAAAAUCCCCUUUAGGUGGGUUU .........((((((...........))))))(((((...((........))...)))-)).((((.(((-------(((.......)))))).)))).. ( -18.10) >DroSec_CAF1 86722 92 + 1 UCUACCCUCGUGCUGUCGCUUUCGCUCAGCACUGUGUUAUCUCCCCCUAAAGUCCACA-CAUGCCCCCUU-------GAAAACCCCCUUUAGGUGGGUUU .........((((((..((....)).))))))(((((...((........))...)))-)).........-------..((((((((....)).)))))) ( -23.70) >DroSim_CAF1 87455 92 + 1 UCUACCCUCGUGCUGUCUCUUUCGCUCAGCACUGUGUCAUCUCCCUCUAAAGUCCACA-UAUGCCCCCUU-------GAAAACCCCCUUUAGGUGGGUUU .........((((((...........))))))(((((...((........))...)))-)).........-------..((((((((....)).)))))) ( -19.20) >DroEre_CAF1 83460 99 + 1 UCUGCCCUCGCGCUGUCUCUUUCACUCAGCAUAUUGUCAUCUCCCUCGAGUGUCAGCA-UACCCCCCGGUCGGUGGGGUAAACCCCUUUUAGGUGGGCUU ...((((.(((((((...........))))....((.((.(((....))))).)))).-((((((((....)).))))))............).)))).. ( -32.60) >DroYak_CAF1 72317 94 + 1 UCCACCCUCAUGCUGUCUCUUUCACUCAGCAUAUUGCCAUCUCCCGCGAGUGUCAGCAAUAACCCCCCUUCA------AAAACCCCCUUUGGAUGGGUUU ..........(((((.......(((((.((...............))))))).)))))......(((.((((------((.......)))))).)))... ( -19.46) >consensus UCUACCCUCGUGCUGUCUCUUUCGCUCAGCACUGUGUCAUCUCCCUCUAAAGUCCACA_UAUGCCCCCUU_______GAAAACCCCCUUUAGGUGGGUUU .........((((((...........))))))...............................................((((((((....)).)))))) (-13.34 = -13.06 + -0.28)
Location | 5,794,976 – 5,795,068 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 80.90 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -18.78 |
Energy contribution | -18.02 |
Covariance contribution | -0.76 |
Combinations/Pair | 1.36 |
Mean z-score | -2.01 |
Structure conservation index | 0.67 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5794976 92 - 27905053 AAACCCACCUAAAGGGGAUUUUC-------AAGGGGGCAUA-UGUGGACUUUAGAGGGAGAUGACACAGUGCCGAGCGAAAGAGACAGCACGAGGGUAGA ..((((.(((....)))....((-------.....(((((.-((((..((((....))))....)))))))))..((..........))..))))))... ( -22.00) >DroSec_CAF1 86722 92 - 1 AAACCCACCUAAAGGGGGUUUUC-------AAGGGGGCAUG-UGUGGACUUUAGGGGGAGAUAACACAGUGCUGAGCGAAAGCGACAGCACGAGGGUAGA ..((((.(((....)))(((((.-------...))))).((-(((...((((....))))...)))))((((((.((....))..))))))..))))... ( -31.90) >DroSim_CAF1 87455 92 - 1 AAACCCACCUAAAGGGGGUUUUC-------AAGGGGGCAUA-UGUGGACUUUAGAGGGAGAUGACACAGUGCUGAGCGAAAGAGACAGCACGAGGGUAGA ..((((.(((....((((((..(-------(..........-))..))))))..)))...........((((((..(....)...))))))..))))... ( -26.20) >DroEre_CAF1 83460 99 - 1 AAGCCCACCUAAAAGGGGUUUACCCCACCGACCGGGGGGUA-UGCUGACACUCGAGGGAGAUGACAAUAUGCUGAGUGAAAGAGACAGCGCGAGGGCAGA ..((((((((.....)))).((((((.((....))))))))-(((((.(((((....))).)).))....((((..(....)...))))))).))))... ( -33.80) >DroYak_CAF1 72317 94 - 1 AAACCCAUCCAAAGGGGGUUUU------UGAAGGGGGGUUAUUGCUGACACUCGCGGGAGAUGGCAAUAUGCUGAGUGAAAGAGACAGCAUGAGGGUGGA ....((((((.......((..(------(...(.(((((((....)))).))).)....))..))..(((((((..(....)...))))))).)))))). ( -25.60) >consensus AAACCCACCUAAAGGGGGUUUUC_______AAGGGGGCAUA_UGUGGACUUUAGAGGGAGAUGACACAGUGCUGAGCGAAAGAGACAGCACGAGGGUAGA ..((((.(((....))).........................(((.(.((((....)))).).)))..((((((..(....)...))))))..))))... (-18.78 = -18.02 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:00 2006