Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,792,071 – 5,792,165 |
Length | 94 |
Max. P | 0.853323 |
Location | 5,792,071 – 5,792,165 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 81.36 |
Mean single sequence MFE | -19.20 |
Consensus MFE | -12.07 |
Energy contribution | -11.97 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.14 |
Mean z-score | -2.34 |
Structure conservation index | 0.63 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853323 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5792071 94 + 27905053 CAAGACUAUUAUUCUUGAUUAUUAGCGGUUUUUUAAAGGGUUUUUAUUUUCUCAGUGAGCUCGCUGCUUACUUCCCCCGUUUUAUUUUUGCCUA (((((.......)))))......(((((.........(((..........)))(((((((.....)))))))....)))))............. ( -16.70) >DroSec_CAF1 83855 89 + 1 CAAGACUAUUAUUCUUGAUUAUUAGGGGCUUAUUAAAGAGUUUUU---UU--CAGUGAGCUCGCUGCUUACUUCCCCCGUUUUAUUUUUGCCUA (((((.......))))).......((((.........(((.....---))--)(((((((.....)))))))..))))................ ( -19.60) >DroSim_CAF1 84595 75 + 1 CAAGACU----------------AGGGGUUUAUUAGAGGGUUUUU---UUCUCAGUGAGCUCGCUGCUUACUUCCCCCGUUUUAUUUUUGCCUA .(((((.----------------.((((.......(((((.....---)))))(((((((.....))))))).)))).)))))........... ( -21.30) >consensus CAAGACUAUUAUUCUUGAUUAUUAGGGGUUUAUUAAAGGGUUUUU___UUCUCAGUGAGCUCGCUGCUUACUUCCCCCGUUUUAUUUUUGCCUA ........................(((((((....)))...............(((((((.....)))))))..))))................ (-12.07 = -11.97 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:58 2006