Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,791,320 – 5,791,424 |
Length | 104 |
Max. P | 0.929186 |
Location | 5,791,320 – 5,791,424 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 88.82 |
Mean single sequence MFE | -30.95 |
Consensus MFE | -28.39 |
Energy contribution | -29.03 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.12 |
Mean z-score | -1.70 |
Structure conservation index | 0.92 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929186 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5791320 104 - 27905053 CUGCCAGAUAAACGGAGCUGGGC-CGGCAACAUUGUGGCCAUAACCGGCGGCUAAUUCGUGCUUUAAUGCACACAUCACGAUGGAAUUUGGCAAACCUCUUUCUC .((((((((.......((((...-))))..((((((((((......))).........((((......))))....)))))))..))))))))............ ( -32.90) >DroSec_CAF1 83107 104 - 1 CUGCCAGAUAAACGGAGCUGGGC-CGGCAACAUUGUGGCCAUAACCGGCGGCUAAUUCGUGCUUUAAUGCACACAUCACGAUGGAAUUUGGCAAACCUCUUUCUC .((((((((.......((((...-))))..((((((((((......))).........((((......))))....)))))))..))))))))............ ( -32.90) >DroSim_CAF1 83842 104 - 1 CUGCCAGAUAAACGGAGCUGGGC-CGGCAACAUUGUGGCCAUAACCGGCGGCUAAUUCGUGCUUUAAUGCACACAUCACGAUGGAAUUUGGCAAACCUCUUUCUC .((((((((.......((((...-))))..((((((((((......))).........((((......))))....)))))))..))))))))............ ( -32.90) >DroEre_CAF1 79891 104 - 1 CUGCCAGAUAAACGGAGCUGGGC-CAGCAACAUUGUGGCCAUAACCGGGGGCUAAUUCGUGCUUUAAUGCACACAUCACGAUGGAAUUUGGCAAACCUCUUUCUC .((((((((.......((((...-))))..((((((((((.........)))......((((......))))....)))))))..))))))))............ ( -32.00) >DroYak_CAF1 68573 105 - 1 CUGCCAGAUAAACGGAGCUUGGUAAAGCAACAUUGUGGCCAUAACCGGCGGCUAAUUCGUGCUUUAAUGCACACAUCACGAUGGAAUUUGGCAAACCUCUAUCUC .((((((((.......((((....))))..((((((((((......))).........((((......))))....)))))))..))))))))............ ( -33.90) >DroAna_CAF1 35532 81 - 1 CUACGAGAUA------------C-UGGCAACAUUGUGGCUAUAACCGGCGGCUAAUUCGUGCUUUAAUGCACACAUCACGAUGGAAUUUGGCAG----------- ..........------------(-((.(((((((((((((......))).........((((......))))....)))))))....))).)))----------- ( -21.10) >consensus CUGCCAGAUAAACGGAGCUGGGC_CGGCAACAUUGUGGCCAUAACCGGCGGCUAAUUCGUGCUUUAAUGCACACAUCACGAUGGAAUUUGGCAAACCUCUUUCUC .((((((((.......((((....))))..((((((((((......))).........((((......))))....)))))))..))))))))............ (-28.39 = -29.03 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:57 2006