Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 868,533 – 868,653 |
Length | 120 |
Max. P | 0.840743 |
Location | 868,533 – 868,653 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.47 |
Mean single sequence MFE | -34.80 |
Consensus MFE | -32.78 |
Energy contribution | -33.02 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.15 |
Structure conservation index | 0.94 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 868533 120 + 27905053 UGUUUUUUGCCUUGUAUCUUUUUUGCUUACAGUUGCACGACAACAACGUCGCCGAUGACACGACAAGCUGCGCUGCGAUGUCGUAGUUUUGCUUGUUUUUAUAGUUGUUGCCGAGUUGGU ........(((............(((........)))((.(((((((((((....))))..(((((((...((((((....))))))...)))))))......))))))).))....))) ( -34.90) >DroSec_CAF1 43550 120 + 1 UGUUUUUUGCCUUGUAUCUUUUUUGCUUACAGUUGCACGACAACAACUUCGACGAUGACACGACAAGCUGCGCUGCGAUGUCGUAGUUUUGCUUGUUUUUAUAGUUGUUGCCGAGUUGGU ((((...(((.(((((...........)))))..))).)))).(((((((((((((.....(((((((...((((((....))))))...)))))))......)))))))..)))))).. ( -34.70) >DroSim_CAF1 42763 120 + 1 UGUUUUUUGCCUUGUAUCUUUUUUGCUUACAGUUGCACGACAACAACUUCGACGAUGACACGACAAGCUGCGCUGCGAUGUCGUAGUUUUGCUUGUUUUUAUAGUUGUUGCCGAGUUGGU ((((...(((.(((((...........)))))..))).)))).(((((((((((((.....(((((((...((((((....))))))...)))))))......)))))))..)))))).. ( -34.70) >DroEre_CAF1 42786 120 + 1 UGUUUUUUGCCUUAUAUCUUUUUUGCUUACAGUUGCACGACAACAACGUCGCCGAUGACACGACAAGCUGCGCUGCGAUGUCGUAGUUUUGCUUGUUUUUAUAGUUGUUGCCGAGUUGGU ........(((............(((........)))((.(((((((((((....))))..(((((((...((((((....))))))...)))))))......))))))).))....))) ( -34.90) >consensus UGUUUUUUGCCUUGUAUCUUUUUUGCUUACAGUUGCACGACAACAACGUCGACGAUGACACGACAAGCUGCGCUGCGAUGUCGUAGUUUUGCUUGUUUUUAUAGUUGUUGCCGAGUUGGU ((((...(((.(((((...........)))))..))).)))).((((.(((.(((..((..(((((((...((((((....))))))...)))))))......))..))).))))))).. (-32.78 = -33.02 + 0.25)
Location | 868,533 – 868,653 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.47 |
Mean single sequence MFE | -28.15 |
Consensus MFE | -26.15 |
Energy contribution | -26.65 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.27 |
Structure conservation index | 0.93 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.840743 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 868533 120 - 27905053 ACCAACUCGGCAACAACUAUAAAAACAAGCAAAACUACGACAUCGCAGCGCAGCUUGUCGUGUCAUCGGCGACGUUGUUGUCGUGCAACUGUAAGCAAAAAAGAUACAAGGCAAAAAACA .((....((((((((((...................((((((..((......)).))))))(((......)))))))))))))(((........)))............))......... ( -28.90) >DroSec_CAF1 43550 120 - 1 ACCAACUCGGCAACAACUAUAAAAACAAGCAAAACUACGACAUCGCAGCGCAGCUUGUCGUGUCAUCGUCGAAGUUGUUGUCGUGCAACUGUAAGCAAAAAAGAUACAAGGCAAAAAACA .((....(((((((((((.......(((((....((.((....)).))....)))))(((((....)).))))))))))))))(((........)))............))......... ( -27.40) >DroSim_CAF1 42763 120 - 1 ACCAACUCGGCAACAACUAUAAAAACAAGCAAAACUACGACAUCGCAGCGCAGCUUGUCGUGUCAUCGUCGAAGUUGUUGUCGUGCAACUGUAAGCAAAAAAGAUACAAGGCAAAAAACA .((....(((((((((((.......(((((....((.((....)).))....)))))(((((....)).))))))))))))))(((........)))............))......... ( -27.40) >DroEre_CAF1 42786 120 - 1 ACCAACUCGGCAACAACUAUAAAAACAAGCAAAACUACGACAUCGCAGCGCAGCUUGUCGUGUCAUCGGCGACGUUGUUGUCGUGCAACUGUAAGCAAAAAAGAUAUAAGGCAAAAAACA .((....((((((((((...................((((((..((......)).))))))(((......)))))))))))))(((........)))............))......... ( -28.90) >consensus ACCAACUCGGCAACAACUAUAAAAACAAGCAAAACUACGACAUCGCAGCGCAGCUUGUCGUGUCAUCGGCGAAGUUGUUGUCGUGCAACUGUAAGCAAAAAAGAUACAAGGCAAAAAACA .((....((((((((((...................((((((..((......)).))))))(((......)))))))))))))(((........)))............))......... (-26.15 = -26.65 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:22 2006