Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,787,701 – 5,787,799 |
Length | 98 |
Max. P | 0.654076 |
Location | 5,787,701 – 5,787,799 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.20 |
Mean single sequence MFE | -30.45 |
Consensus MFE | -21.52 |
Energy contribution | -21.52 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.71 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5787701 98 + 27905053 -----UGC-CGAGUGCCGCAGCACUCG---CAAGUUGCA-----AGUU------GCACA-AACAUGUUGCUCACUGGCUCCGCGACAUGAUUCUGAGGCGCAGAUAUAA-AACCGAAAAA -----.((-(((((((....))))))(---(((.(....-----).))------))...-..((((((((...........)))))))).......)))..........-.......... ( -28.40) >DroGri_CAF1 146567 106 + 1 ---AGUGC-CGAGUGCCGCAGCACUCGCCGCAAGUU---GUUGCUGUU------GCACA-AACAUGUUGCUCACUGGCUCCGCGACAUGAUUCUGAGGCGCAGAUAUAAAAACCAAAAAG ---.((((-(..((((.((((((..((.(....).)---).)))))).------)))).-..((((((((...........)))))))).......)))))................... ( -38.30) >DroWil_CAF1 115345 93 + 1 ------GC-CGAGUGCCCGAGCACUCC--------GCCA-----AGUU------GCACAAAACAUGUUGCUCACUGGCUCCGCGACAUGAUUCUGAGGCGCAGAUAUAA-AACCGAAAUA ------((-(((((((....)))))).--------((..-----....------))......((((((((...........)))))))).......)))..........-.......... ( -24.80) >DroMoj_CAF1 72876 112 + 1 ---GCCGC-CGAGUGCCGCAGCACUCG---CAAGUUGCUGUUGUUGUUGCAGUCUUACA-AACAUGUUGCUCACUGGCUCCGCGACAUGAUACUGAGGCGCAGAUAUUAAAACUGAAAAA ---((.((-(((.(((.((((((...(---(.....))...)))))).))).)).....-..((((((((...........)))))))).......)))))................... ( -33.10) >DroAna_CAF1 31774 96 + 1 GGCUCUGC-CGAGUGCUGGAGCACUCG---CAA------------GUU------GCACA-AACAUGUUGCUCACUGGCUCCGCGACAUGAUUCUGAGGCGCAGAUAUAA-AACCGAAAAA ...(((((-(((((((....)))))))---...------------((.------.((.(-(.((((((((...........)))))))).)).))..))))))).....-.......... ( -31.40) >DroPer_CAF1 85273 92 + 1 -----UGCCCGAGUGCCGCAGCACUCG---CAA------------GUU------GCACA-AACAUGUUGCUCACUGGCUCCGCGACAUGAUUCUGAGGCGCAGAUAUAA-AACCGAAAAA -----(((((((((((....))))))(---(..------------...------))...-..((((((((...........)))))))).......)).))).......-.......... ( -26.70) >consensus _____UGC_CGAGUGCCGCAGCACUCG___CAA__U_________GUU______GCACA_AACAUGUUGCUCACUGGCUCCGCGACAUGAUUCUGAGGCGCAGAUAUAA_AACCGAAAAA ......((.(((((((....))))))....................................((((((((...........)))))))).......)))..................... (-21.52 = -21.52 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:53 2006