Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,777,977 – 5,778,075 |
Length | 98 |
Max. P | 0.866058 |
Location | 5,777,977 – 5,778,075 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 92.27 |
Mean single sequence MFE | -30.25 |
Consensus MFE | -25.73 |
Energy contribution | -25.98 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.03 |
Mean z-score | -1.92 |
Structure conservation index | 0.85 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5777977 98 - 27905053 AAUGAGCUUUAAAAAUAUAAAUUAUGACCGCACUGCUUUUGCUGGCUUUCUGUGUGG-------UAUGCCUCAUGCACUCGCAGUCGUGAUUUAUGGUGAGCGAG .....((((......(((((((((((((.((...((....))..))....((((.((-------((((...))))).).)))))))))))))))))..))))... ( -28.60) >DroSec_CAF1 69985 98 - 1 AAUGAGCUUUAAAAAUAUAAAUUAUGACCGCACUGCUUUUGCUGGCUUUCUGUGUGG-------UAUGCCUCAUGCACUCGCAGUCGUGAUUUAUGGCGAGCGAG .....((((......(((((((((((((.((...((....))..))....((((.((-------((((...))))).).)))))))))))))))))..))))... ( -27.90) >DroEre_CAF1 65534 97 - 1 AAUGAGCUUUAAAAAUAUAAAUUAUGACCGCACAGCU-CUGCUGGCUUUCUAUGUGG-------UCUGCCUCAUGCACUCGCAGUCGUGAUUUAUGGCGAGCGAG .....((((......(((((((((((((.((.((((.-..))))......((((.((-------....)).)))).....)).)))))))))))))..))))... ( -28.70) >DroYak_CAF1 54662 104 - 1 AAUGAGCUUUAAAAAUAUAAAUUAUGACCGCACAGCU-CUGCUGGCUUUCUAUGCGGUGUGCGGUAUGCCUCAUGCACUCGCAGUCGUGAUUUAUGGUGAGCGAG .....((((......(((((((((((((.((.((((.-..))))))......(((((.((((((....))....))))))))))))))))))))))..))))... ( -35.80) >consensus AAUGAGCUUUAAAAAUAUAAAUUAUGACCGCACAGCU_CUGCUGGCUUUCUAUGUGG_______UAUGCCUCAUGCACUCGCAGUCGUGAUUUAUGGCGAGCGAG .....((((......(((((((((((((.((.((((....))))((.....(((.((...........)).)))))....)).)))))))))))))..))))... (-25.73 = -25.98 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:50 2006