Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,776,961 – 5,777,066 |
Length | 105 |
Max. P | 0.712993 |
Location | 5,776,961 – 5,777,066 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 87.90 |
Mean single sequence MFE | -32.38 |
Consensus MFE | -24.30 |
Energy contribution | -25.46 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.09 |
Mean z-score | -1.78 |
Structure conservation index | 0.75 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712993 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5776961 105 - 27905053 CUCGCAUCGCCAUUCGCAGUUCGCUGUUCGCUGUUCGCUGUUCAGUGUGUAGUGAUGUAAGCAGAGCACUUGGCACAUCCAUUGUUUGCUGGGGUGCAUUUGUUU ...(((((((((......(((((((..((((((..((((....))))..))))))....))).))))...))))....(((........))))))))........ ( -33.40) >DroSec_CAF1 69001 98 - 1 CUCGCAUCGCCAUUCGCAGUUCGGUGU-------UCGCUGUUCAGCGUGUAGUGAUGUAAGCAGAGCACUUGGCACAUCCAUUGUUUGCUGGGGUGCAUUUGUUU ...(((((((.((.(((.(..((((..-------..))))..).))).)).)))))))((((((((((((..(((((.....)))..))..).)))).))))))) ( -33.90) >DroSim_CAF1 67703 98 - 1 CUCGCAUCGCCAUUCGCAGUUCGCUGU-------UCGCUGUUCAGCGUGUAGUGAUGUAAGCAGAGCACUUGGCACAUCCAUUGUUUGCUGGGGUGCAUUUGUUU ...(((((.((....(((..((((((.-------.((((....))))..))))))))).((((((.((..(((.....))).)))))))))))))))........ ( -32.00) >DroEre_CAF1 64541 98 - 1 CUCGCAUCGCCAUUCGCAGUUCGCUGU-------GCGCUGCUCAGUGUAUAGUGAUGUAAGCAGAGCACUUGGCACAUCCAUUGUUUGCCGGGGUGCAUUUGUUU ...(((((((.....)).....(((((-------(((((....)))))))))))))))(((((((((((((((((((.....)))..))).)))))).))))))) ( -36.10) >DroYak_CAF1 53610 86 - 1 CUC------------ACAGUUCGCUGU-------UCGGUGUAUAGUGUAUAGUGAUGUAAGCAGAGCACUUGGCACAUCCAUUGUUUGCCGGGGUGCAUUUGUUU .((------------((.((.((((((-------.......)))))).)).))))...(((((((((((((((((((.....)))..))).)))))).))))))) ( -26.50) >consensus CUCGCAUCGCCAUUCGCAGUUCGCUGU_______UCGCUGUUCAGUGUGUAGUGAUGUAAGCAGAGCACUUGGCACAUCCAUUGUUUGCUGGGGUGCAUUUGUUU ...(((((((.....((((....))))........((((....))))....)))))))(((((((((((((((((((.....)))..))).)))))).))))))) (-24.30 = -25.46 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:49 2006