Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,770,262 – 5,770,355 |
Length | 93 |
Max. P | 0.881097 |
Location | 5,770,262 – 5,770,355 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 79.78 |
Mean single sequence MFE | -25.17 |
Consensus MFE | -14.00 |
Energy contribution | -14.56 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.23 |
Mean z-score | -2.43 |
Structure conservation index | 0.56 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.881097 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5770262 93 + 27905053 C----GUGUGUUUGGCUAUUUCGUUUAGAGCUUUUAAGGGCUCUUAAUAGCAAACAAACAAAAACCUAAAAAACGAGCAGCCGGCAACGAC-----AGAAAU .----((.((((((.(((((......(((((((....))))))).))))))))))).))....................(.((....)).)-----...... ( -21.80) >DroPse_CAF1 68740 91 + 1 A----AUGUGUGCGUGUCUUUCGUUAGGAGCGUUUAAGGGCUCUUAACAGCAAACACACAAAA--CCUCAAAGCGAGCAACAACCAGCGAC-----AGCGAC .----.((((((..((.((...(((((((((........)))))))))))))..))))))...--.......((..((........))...-----.))... ( -25.60) >DroSec_CAF1 62507 93 + 1 C----GUGUGUUUGGCUAUUUCGUUUAGAGCUUUUAAGGGCUCUUAAUAGCGAACAAACAAAAAACCUAAAAACGAGCAGCCGGCAAUGGC-----AGAAAU .----((.((((((.(((((......(((((((....))))))).))))))))))).))....................((((....))))-----...... ( -23.60) >DroSim_CAF1 62688 93 + 1 C----GUGUGUUUGGCUAUUUCGUUUAGAGCUUUUAAGGGCUCUUAAUAGCGAACAAACAAAAAACCUAAAAACGAGCAGCCGGCAACGGC-----AGAAAC .----((.((((((.(((((......(((((((....))))))).))))))))))).))....................((((....))))-----...... ( -28.60) >DroYak_CAF1 46676 97 + 1 C----GUGUGUUUGGCUAUUUCGUUUAGAGCUUUUAAGGGCUCUUAAUAGCGAACAAACAAAAAC-CUAAAAACGAGCAGCCGGCAAAGGCAGCAGAAAAAC .----((.((((((.(((((......(((((((....))))))).))))))))))).))......-..........((.(((......))).))........ ( -26.00) >DroAna_CAF1 14089 86 + 1 CGUUUGUGUGUUUGGCUAUUUCGUUUAGAGCUUUUAAGGGCUCUUAACAGCAAACACACAAAACC-CUAAAAACGACCAGGUAGCAA--------------- ..((((((((((((.((.....(((.(((((((....))))))).)))))))))))))))))(((-.............))).....--------------- ( -25.42) >consensus C____GUGUGUUUGGCUAUUUCGUUUAGAGCUUUUAAGGGCUCUUAAUAGCAAACAAACAAAAACCCUAAAAACGAGCAGCCGGCAACGGC_____AGAAAC ........((.((((((..((((((((((((((....)))))))..........................))))))).))))))))................ (-14.00 = -14.56 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:48 2006