Locus 2033

Sequence ID 3R_DroMel_CAF1
Location 5,769,456 – 5,769,555
Length 99
Max. P 0.639948
window3335

overview

Window 5

Location 5,769,456 – 5,769,555
Length 99
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 78.76
Mean single sequence MFE -42.02
Consensus MFE -27.95
Energy contribution -27.23
Covariance contribution -0.72
Combinations/Pair 1.33
Mean z-score -1.33
Structure conservation index 0.67
SVM decision value 0.22
SVM RNA-class probability 0.639948
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5769456 99 - 27905053
GCUGUGCGUGUGCGUGCGUUGUCCGCAUCGUGGGGCGACAUGAUAUUGUGUGGGCUGUGGUGGGCG------UGGCCGUCGUCACUCAAUGGCGGCGACGGGGAA
((((..((....))..)...((((((((((((......))))).....))))))).......)))(------(.((((((((......)))))))).))...... ( -38.50)
>DroPse_CAF1 67326 102 - 1
GUUGUGCGUAUGCGUGCAUUUGCCGCAUCGUGCGGCGACAAUAUAUUG---GGGCUGUGAUGGCCGUGCCCGUGGCCAUCGUCGCUGAGGGGCGGCGAGGCCGAG
((((..((.(((((.((....)))))))))..))))............---.((((..((((((((......))))))))((((((....))))))..))))... ( -48.80)
>DroEre_CAF1 56936 99 - 1
GUUGUGCGUAUGCGUGCGUUGGCCGCAUCGUGGGGCGACAUGAUGUUGUGUGGGCUGGGGUGGGCG------UGGCCGUCGUCACUCAGAGGCGGCGAUGCGGAA
.((.(((((((((.(((.(..(((((((((((......))))))))......)))..).))).)))------).((((((.((.....)))))))).))))).)) ( -42.10)
>DroWil_CAF1 93101 96 - 1
GUUGUGCGUAUACGUGCAUUGGCUGCAUCAUGUGGUGAUAGAAUGUGA---UGACUAUGAUGAGCA------UGUCCAUCAUCGCUCAACGGCGGCGAGGCCGAG
((((.(((.....(..(((..(((.((((((((.((.((.....)).)---).)).))))))))))------))..).....))).))))(((......)))... ( -29.80)
>DroYak_CAF1 45830 99 - 1
GUUGUGCGUAUGCGUGCGUUGGCCGCAUCGUGGGGCGACAUCAUGUUGUGUGGGCUGUGGUGGGCG------UGGCCGUCGUCGCUCAACGGCGGCGAUGGGGAG
...(..((....))..)(((.((((((.(.(.(.(((((.....))))).).)).)))))).))).------...(((((((((((....))))))))))).... ( -43.20)
>DroPer_CAF1 66787 102 - 1
GUUGUGCGUAUGCGUGCAUUUGCCGCAUCGUGCGGCGACAAUAUAUUG---GGGCUGUGAUGGCCGUGCCCGUGGCCAUCGUCGCUGAGCGGCGGCGAGGCCGAG
((((..((.(((((.((....)))))))))..))))............---.((((..((((((((......))))))))((((((....))))))..))))... ( -49.70)
>consensus
GUUGUGCGUAUGCGUGCAUUGGCCGCAUCGUGGGGCGACAUGAUAUUG___GGGCUGUGAUGGGCG______UGGCCAUCGUCGCUCAACGGCGGCGAGGCCGAG
..((..((....))..))...(((((......(((((((........(......)...(((((.((......)).))))))))))))....)))))......... (-27.95 = -27.23 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:47 2006